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Report for CCDS17662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17662.1 Public Mus musculus 3 Hmgcs2 23 108 98 CCDS HistoryNCBI Gene:15360Re-query CCDS DB by CCDS ID:17662.1Re-query CCDS DB by GeneID:15360See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090746.2 ENSMUSP00000088249.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090746.2Link to Ensembl Protein Viewer:ENSMUSP00000088249.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090746Re-query CCDS DB by Protein ID:ENSMUSP00000088249
Original member Current member EBI ENSMUST00000120541.7 ENSMUSP00000113296.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120541.7Link to Ensembl Protein Viewer:ENSMUSP00000113296.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120541Re-query CCDS DB by Protein ID:ENSMUSP00000113296
Original member Current member NCBI NM_008256.4 NP_032282.2 Accepted alive Link to Nucleotide Sequence:NM_008256.4Link to Protein Sequence:NP_032282.2Re-query CCDS DB by Nucleotide ID:NM_008256Re-query CCDS DB by Protein ID:NP_032282Link to BLAST:NP_032282.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032282.2 508 P54869 508 100% 0 0

Chromosomal Locations for CCDS 17662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98280484 98280587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98290887 98291341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98296136 98296261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98296970 98297134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98297378 98297543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98299120 98299290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98301573 98301679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98302622 98302747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98303165 98303271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGCAGCGGCTTTTGGCTCCAGCGAGGCGGGTCCTGCAAGTGAAGAGAGCGATGCAGGAAACTTCGCTCA
CACCTGCTCACCTGCTCTCAGCAGCCCAGCAGAGGTTTTCTACAATCCCTCCTGCTCCCCTGGCCAAAAC
AGATACATGGCCAAAAGATGTGGGCATCCTTGCCCTGGAGGTCTATTTTCCAGCCCAATATGTGGACCAA
ACTGACCTGGAAAAGTTCAACAATGTGGAAGCAGGGAAGTATACAGTGGGCTTGGGCCAGACCCGTATGG
GCTTCTGTTCAGTCCAGGAGGACATCAACTCCCTGTGCCTGACAGTGGTACAGAGGCTGATGGAACGCAC
AAAGCTGCCGTGGGATGCTGTGGGCCGTCTGGAAGTGGGCACCGAGACCATCATTGACAAGTCCAAGGCT
GTCAAAACAGTGCTCATGGAACTGTTCCAGGATTCAGGCAACACTGACATCGAGGGCATAGATACCACCA
ACGCCTGTTATGGCGGCACAGCCTCCCTCTTCAATGCTGCCAACTGGATGGAGTCCAGCTACTGGGATGG
TCGCTATGCCCTGGTGGTCTGTGGTGACATTGCAGTCTACCCGAGTGGTAACGCCCGCCCCACAGGTGGT
GCTGGGGCTGTGGCAATGCTGATCGGGCCCAAGGCCCCTCTGGTCCTCGAGCAAGGGCTGAGGGGAACTC
ACATGGAGAACGCGTACGACTTCTACAAACCAAACTTGGCCTCAGAGTATCCACTGGTGGATGGGAAGCT
GTCTATCCAGTGCTACCTGCGGGCCTTGGATCGATGCTATGCAGCCTACCGCAAGAAGATCCAGAATCAG
TGGAAGCAAGCTGGAAACAACCAGCCTTTCACCCTCGATGATGTGCAGTATATGATCTTCCACACACCCT
TTTGCAAGATGGTCCAGAAATCCCTGGCTCGGTTGATGTTCAATGACTTCCTGTCATCCAGCAGTGACAA
ACAGAACAACTTATACAAGGGCCTAGAGGCCTTCAGGGGTCTAAAGCTGGAAGAAACCTACACCAACAAG
GATGTAGACAAGGCTCTTTTGAAGGCCTCCCTGGACATGTTCAACCAGAAGACCAAGGCCTCCCTTTACC
TCTCCACAAATAATGGGAACATGTACACCTCTTCCCTCTATGGCTGCCTGGCCTCACTTCTCTCTCACCA
CTCTGCCCAAGAATTGGCTGGCTCCAGGATTGGAGCCTTCTCCTACGGCTCAGGCTTAGCAGCAAGTTTC
TTTTCATTCCGAGTGTCCAAGGATGCTTCCCCAGGTTCCCCCCTGGAGAAACTGGTGTCTAGTGTGTCAG
ATCTGCCCAAACGTCTAGACTCCCGGAGACGCATGTCCCCTGAGGAATTCACAGAAATAATGAACCAGAG
AGAGCAATTTTACCACAAGGTGAACTTCTCTCCACCTGGAGACACAAGCAATCTCTTCCCAGGTACTTGG
TACCTTGAACGAGTGGATGAGATGCATCGCAGGAAGTATGCCCGGTGTCCCGTCTAA

Translation (508 aa):
MQRLLAPARRVLQVKRAMQETSLTPAHLLSAAQQRFSTIPPAPLAKTDTWPKDVGILALEVYFPAQYVDQ
TDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKA
VKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGG
AGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQ
WKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETYTNK
DVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASF
FSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTW
YLERVDEMHRRKYARCPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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