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Report for CCDS40819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40819.1 Public Mus musculus 9 Fyco1 23 108 98 CCDS HistoryNCBI Gene:17281Re-query CCDS DB by CCDS ID:40819.1Re-query CCDS DB by GeneID:17281See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 40819.1
The coding region has been updated to remove a 3-nt insertion versus the reference genome sequence, supported by the available transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084715.13 ENSMUSP00000081764.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084715.13Link to Ensembl Protein Viewer:ENSMUSP00000081764.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084715Re-query CCDS DB by Protein ID:ENSMUSP00000081764
Original member Current member EBI ENSMUST00000167595.8 ENSMUSP00000133222.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167595.8Link to Ensembl Protein Viewer:ENSMUSP00000133222.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167595Re-query CCDS DB by Protein ID:ENSMUSP00000133222
Original member NCBI NM_001110253.2 NP_001103723.2 Updated not alive Link to Nucleotide Sequence:NM_001110253.2Link to Protein Sequence:NP_001103723.2Re-query CCDS DB by Nucleotide ID:NM_001110253Re-query CCDS DB by Protein ID:NP_001103723
Current member NCBI NM_001110253.3 NP_001103723.2 Accepted alive Link to Nucleotide Sequence:NM_001110253.3Link to Protein Sequence:NP_001103723.2Re-query CCDS DB by Nucleotide ID:NM_001110253Re-query CCDS DB by Protein ID:NP_001103723Link to BLAST:NP_001103723.2
Original member NCBI NM_148925.3 NP_683727.3 Updated not alive Link to Nucleotide Sequence:NM_148925.3Link to Protein Sequence:NP_683727.3Re-query CCDS DB by Nucleotide ID:NM_148925Re-query CCDS DB by Protein ID:NP_683727
Current member NCBI NM_148925.4 NP_683727.3 Accepted alive Link to Nucleotide Sequence:NM_148925.4Link to Protein Sequence:NP_683727.3Re-query CCDS DB by Nucleotide ID:NM_148925Re-query CCDS DB by Protein ID:NP_683727Link to BLAST:NP_683727.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103723.2 1437 Q8VDC1 1437 100% 0 0
NP_683727.3 1437 Q8VDC1 1437 100% 0 0

Chromosomal Locations for CCDS 40819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123792674 123792749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123794725 123794834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123797517 123797727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123801222 123801317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123819047 123819191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123822318 123822529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123823178 123823327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123825506 123825673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123826546 123826664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123827085 123827177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123828176 123830479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123831287 123831377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123833098 123833241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123834793 123834899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123838872 123838997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123840542 123840648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123843459 123843513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4314 nt):
ATGGCTTCTAGCAGCACTGAGACTCAGCTCCAGAGGATCATCCGTGATCTACAAGATGCAGCGACAGAAC
TA
AGCCATGAATTTAAGGAAGGCGGAGAGCCAATCACAGATGACAGCACCAGTTTGCACAAGTTTTCTTA
C
AAACTTGAGTATCTTCTGCAATTTGATCAGAAGGAGAAGGCGAGCCTCCTGGGAAGCAAGAAAGACTAC
TGG
GATTACTTTTGTGCGTGCCTAGCCAAGGTGAAAGGAGCAAATGATGGCATTCGATTTGTCAGGTCCA
TC
TCTGAGCTCCGAACATCTCTGGGGAAAGGGAGAGCCTTCATTCGCTACTCTTTGGTGCACCAGAGGCT
G
GCAGACACCTTGCAGCAGTGCTTCATGAACACTAAAGTGACCAGTGACTGGTATTATGCAAGAAGCCCC
TTT
CTGAAGCCAAAGCTGAGCTCTGACATTGTGGGTCAACTGTATGAGCTGACTGAGGTTCAGTTTGATC
TA
GCACCAAGAGGCTATGACTTGGATGCCGCCTGGCCAACATTTGCCAGGAGGACGCTAGCCACCAGCAC
G
TCTGCTTACATGTGGAAACCCCCCAGCCGAAGCTCCAGCATGAGTAGTTTAGTGAGCAACTACTTGCAG
ACT
CAGGAGATGGCCTCCAGTCTTGACCTGAATTGTTCTCTAAACAATGAAGCACTAGAAAGCTTCGACG
AG
ATGCGGCTGGAGCTGGACCAGTTGGAGGTTCGGGAGAAACAGCTACAAGAACGTGTACAGCAGCTAGA
C
AGGGAGAACCAAGCACTGCGAATGTTGGTCAGCAGACAAGGGGGGCAGCTTCAGGTAGAGAAGGAGATG
GGG
TACCTTGCAGTCGAGGACAGCATTGGCCTTGTGAGCCTGGTAGCAGAACTCCAGAAGCAGGGGGACG
TC
AGCCAGGCCACAGTGAAGAAGCTACAGTCATGTCTGCAGGCCTTGGAGCTAAATGTAGACAAGAAAGA
G
TACAGTCCCTCAGCCTTGCAGCTTGAGAACATGGCGAAGGAGCTTGACACTGTGAGAGGCTCCTTGGGT
AGG
GAGAACCAGCTCCTGGCCAGCCTTTCAGAGCGCCTTGCTAGGGCAGAGAAAGGGGAAAAGACACCTC
CA
GACACAGAGCTTCATCAGGAGCCAGTTCCTGCGGATCTGGTGCTCAAGTTCCAGGAGCTGAAGGGAAA
A
CTTCAAGCCCTAGAAGGAGAGAACACCGAGGCCCAGGAGCTCAACAGGCAGCAGAGTATCAAGCTAGAG
CAA
CTGGCCAAGGAACTACAGCTGAAGGAGGAGGCCCGGGCTAGCCTAGCACACTTAGTGAAGGATGTGG
TC
CCACTTCAGGAAGAGCTGTCTGGAAAGAAGCAAGAGTCAGCTCAGCTCCGACGACAGCTTCAGGAATC
C
CTGGCCCACTTGAGCTCTGTGGAGGAGGAGCTGGCTGAAGCCAGGCAGCAGGAAAAGCAGCATCGAGAA
GAA
AAGCAGCTACTGGAGCAGGAAGCCACGTCTCTTACATGGCAGCTGCAGCTCCTAGAGACCCAGCTAG
GA
CAGGTGAGTCAGCTTGTAAGTGACCTGGAGGAGCAGAAGAAGCAACTCATGCAGGAGAGAGACCATCT
C
AGCCAGAGAGTGGGCACACTGGAGCAGCTAGCCGAGGTGCATGGCCCGCCACAGTCTGCGGAGATGCCG
GAA
AAGAGGCAGCAGTGCCTCCGGGAAGAACAGGTAAACAATAGCACAGTGTCAGAGGCAGAGCAGGAGG
AG
TTGCAGAAGGAGCTGCAGAACATGGTTGACCGCAACCAGCTCCTCGAAGGCAAACTGCAGGCCTTGCA
A
ACTGACTATAAGGCACTGCAGCAGCGAGAGGCAGCAATCCAGGGCTCTTTAGCCTCCCTGGAAGCTGAA
CAG
GCTAGCATCCGGCACCTGGGAAACCAGATGGAAGCAAGCCTCCTGGCTGTGAAGAAAGCCAAAGAGA
CT
ATGAAAGCCCAGGTGGCAGAGAAGGAGGCTGCCCTGCAGAGTAAGGAGAGTGAGTGCCAGAGGCTGCA
G
GAAGAGGCAGATCAGTGCCGGCTTCAGGCAGAGGCCCAGGCCCAGGAGCTCAGAGCTCTTGAGAACCAG
TGC
CAGCAGCAGATTCAGCTGATTGAGGTCCTCTCTGCAGAGAAAGGCCAACAGGGACTCAGCCTGCCCC
AA
GTCAACACAGACCAACTGGCCCTGTCTCAAGCACAGCTGGAAATCCACCAGGGGGAAGCCCAGCGGTT
A
CAGAATGAGGTGGTGGACCTCCAGGCCAAGCTCCAGGTGGCCCTAGGTGATCGAGACAAGTTACAGAGC
CAG
CTGGGTGTGGCTGAGACAGTTCTAAGGGAGCACAAGACCCTGGTGCAACAACTGAAAGAGCAGAATG
AA
GCCCTCAACAGGGCCCATGTTCAGGAGCTGCTTCAGTGCTCAGAGAGAGAGGGGATACTACAGGAGGA
G
AGCATCTACAAGGCCCAGAAGCAGGAACAAGAGCTACGAGCCCTGCAGGCAGAGCTGTCACAGGTGAGG
TGC
AGCTCTGAGGGAGCCCACCTGGAACATGCAGAGCTGCAAGACCAGCTGCACCGAGCCAACACAGACA
CA
GCTGAGCTTGGTATACAGGTCTGTGCACTGACAGCTGAGAAGGATCGAATGGAGGAGGCCCTGGCCAG
C
CTAGCCCAGGAGCTCCAGGACTCCAAAGAGGCAGCACTACAGGAACGAAAGGGCTTGGAGCTCCAAGTG
ATG
CAACTTCAGCAAGAGAAGGAGAAGTTGCAGGAAAAGGTGAAGGCAGCTGAGGAGGCAGCCAGTTCAT
TC
TCTGGTCTGCAGGCACAGCTGGCCCAGGCTGAGCAGCTAGCCCAGAGCCTCCAAGAGACTGCACACCA
G
GAACAAGATGCCCTCAAGTTCCAACTAAGTGCTGAGATTATGGACCACCAGAACCGATTAAAGACAGCC
AAT
GAAGAGTGTGGGCACCTCAGGGCCCAGCTAGAAGAACAAGGCCAGCAGCTGCAAATGACTAAGGAGG
CT
GTGCAGGAACTGGAGATCACCAAGGCGGCCATGGAGGAGAAGCTGAATTGCACCAGTAGCCACCTTGC
A
GAGTGCCAGGCCACTTTACTGCGCAAAGATGAAGAAAGCACTATGCTTCAAACCAGTCTAGAAAGAACA
CAG
AAGGAACTTGAAAAGGCTACATCAAAAATTCAAGAATATTACAACAAACTCTGCCAAGAGGTGACAA
AC
AGGGAAAGGAATGACCAGAAGATGCTTGCAGACCTCGATGACCTGAACAGAACCAAGAAATACCTTGA
G
GAGCGGCTGATAGAGCTGCTCAGGGACAAAGATGCTCTCTGGCAAAAATCCGATGCACTGGAATTCCAG
CAG
AAGCTCAGTGCTGAAGAGAAATGTCTTGGGGACATGGAAGTCAACCACTGCCATGACTGCAAGCGGG
AG
TTCAGCTGGATAGTGCGACGGCACCACTGCAGGATATGTGGCCGTATCTTCTGTTACTACTGCTGTAA
T
AACTATGTTGTGACTAAGCCCAGTGGCAAGAAGGAACGCTGCTGCCGAGCCTGCTTCCAGAAGTTCGGC
GAA
GGCTCTGGATCCAATGATAGCAGTGGTTCAGGCACTAGCCAGGGAGAGCCCAGCCCCATGGTGTCAC
CA
GCTGAAGCAAGTCCCCAGTCCATAGGAAGCCAAGGGATAAACTCAGTCTGCAGACCACCAGACGATGC
T
GTGTTTGACATCATCACTGATGAAGAACTGTGCCAGATCCAAGAATCTGGCTCCTCCTTGCCTGAAACA
CCC
ACTGAAACTGATTCAATGGACCCGAATACGGCTGAACAGGACACCACATCAAACTCATTAACCCCTG
AA
GACACTGAAGACGTGCCCATGGGGCAAGATGCTGAAATCTGCTTGCTGAAGTCAGGAGAGCTGATGAT
C
AAATTACCCCTCACAGTAGAGGAGGTCGCCAGCTTCGGGGAGGGCAGCAGGGAGCTGTTTGTGAGGTCC
AGT
ACCTACAGCCTGATCACCATCACCGTGGCTGAGCCTGGCCTCACCATCAGCTGGGTCTTCTCTTCTG
AT
CCCAAGAGCATCTCCTTCAGTGTGGTCTTCCAAGAGACAGAAGACACGCCGCTCGACCAGTGCAAGGT
C
CTCATTCCCACCACCCGATGCAATTCCCACAAGGAGAACATCCGGGGCCAGCTGAAGGTCCGAATCCCT
GGC
ATCTACTTGCTCATCTTTGACAACACCTTTTCAAGATTTATCTCCAAAAAAGTGCTTTACCACCTGA
CT
GTTGACCGGCCTGTGATCTACGATGGAAGCGATTTCCCATAG


Translation (1437 aa):
MASSSTETQLQRIIRDLQDAATELSHEFKEGGEPITDDSTSLHKFSYKLEYLLQFDQKEKASLLGSKKDY
W
DYFCACLAKVKGANDGIRFVRSISE
LRTSLGKGRAFIRYSLVHQRLADTLQQCFMNTKVTSDWYYARSP
F
LKPKLSSDIVGQLYELTEVQFDLAPRGYDLDAAWPTFA
RRTLATSTSAYMWKPPSRSSSMSSLVSNYLQ
T
QEMASSLDLNCSLNNEALESFDEMRLELDQLEVREKQLQERVQQLDRENQALRMLVSRQGGQLQVEKEM
G
YLAVEDSIGLVSLVAELQKQGDVSQATVKKLQSCLQALELNVDKKEYSPSALQLENMAKELDTVRGSLG
R
ENQLLASLSERLARAEKGEKTPPDTELHQEPVPADLVLKFQELKGKLQALEGENTEAQELNRQQSIKLE
Q
LAKELQLKEEARASLAHLVKDVVPLQEELSGKKQESAQLRRQLQESLAHLSSVEEELAEARQQEKQHRE
E
KQLLEQEATSLTWQLQLLETQLGQVSQLVSDLEEQKKQLMQERDHLSQRVGTLEQLAEVHGPPQSAEMP
E
KRQQCLREEQVNNSTVSEAEQEELQKELQNMVDRNQLLEGKLQALQTDYKALQQREAAIQGSLASLEAE
Q
ASIRHLGNQMEASLLAVKKAKETMKAQVAEKEAALQSKESECQRLQEEADQCRLQAEAQAQELRALENQ
C
QQQIQLIEVLSAEKGQQGLSLPQVNTDQLALSQAQLEIHQGEAQRLQNEVVDLQAKLQVALGDRDKLQS
Q
LGVAETVLREHKTLVQQLKEQNEALNRAHVQELLQCSEREGILQEESIYKAQKQEQELRALQAELSQVR
C
SSEGAHLEHAELQDQLHRANTDTAELGIQVCALTAEKDRMEEALASLAQELQDSKEAALQERKGLELQV
M
QLQQEKEKLQEKVKAAEEAASSFSGLQAQLAQAEQLAQSLQETAHQEQDALKFQLSAEIMDHQNRLK
TA
N
EECGHLRAQLEEQGQQLQMTKEAVQELE
ITKAAMEEKLNCTSSHLAECQATLLRKDEESTMLQTSLERT
Q
KELEKATSKIQEYYNKLCQEVTNRERNDQKMLADLDDLNRTKKYLEERLIELL
RDKDALWQKSDALEFQ
Q
KLSAEEKCLGDMEVNHCHDCKREFSWIVRRHHC
RICGRIFCYYCCNNYVVTKPSGKKERCCRACFQKFG
E
GSGSNDSSGSGTSQGEPSPMVSPAEASPQSIGSQ
GINSVCRPPDDAVFDIITDEELCQIQESGSSLPET
P
TETDSMDPNTAE
QDTTSNSLTPEDTEDVPMGQDAEICLLKSGELMIKLPLTVEEVASFGEGSRELFVRS
S
TYSLITITVAEPGLTISWVFSSDPKSISFSVVFQETEDTPLDQCK
VLIPTTRCNSHKENIRGQLKVRIP
G
IYLLIFDNTFS
RFISKKVLYHLTVDRPVIYDGSDFP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser