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Report for CCDS52535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52535.1 Public Mus musculus 8 Poteg 23 108 98 CCDS HistoryNCBI Gene:70952Re-query CCDS DB by CCDS ID:52535.1Re-query CCDS DB by GeneID:70952See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081321.4 ENSMUSP00000080069.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081321.4Link to Ensembl Protein Viewer:ENSMUSP00000080069.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081321Re-query CCDS DB by Protein ID:ENSMUSP00000080069
Original member Current member NCBI NM_027618.1 NP_081894.1 Accepted alive Link to Nucleotide Sequence:NM_027618.1Link to Protein Sequence:NP_081894.1Re-query CCDS DB by Nucleotide ID:NM_027618Re-query CCDS DB by Protein ID:NP_081894Link to BLAST:NP_081894.1

Chromosomal Locations for CCDS 52535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27447818 27448062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27449876 27449990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27450153 27450326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27453238 27453344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27456727 27456864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27458867 27458928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27459736 27459771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27462037 27462073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27463735 27463804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27473521 27473614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27479946 27479974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27480072 27480138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27481622 27481689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27494857 27495036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGTCCTTTTCCATGAAGAAGATCTTTGGGGCTAAGGAAAAGACACCCTTGGGTTTCTGTGATGCCCCAC
AAATGACTGTCTCTGAGTTTTTCTTCGGTGAAAATCCAAACTATCCGAAATACCATACAACATACAGACC
GTTGGGGCATATTCACAGGGTTGCTGCTGAGGGTGATGCAGCCCGGATGGAGATTCTCCTCACGCTTGGA
CAATGCAACGTGTACCACAGAGACCGCAAGGACAGGACAGCTTTGCACTTTGCCTGTGTCTATGGCCGGC
TACCAGTAGTGACCATTCTAGTGAAGAATAATTGTGAGATCGATGCCTTGGACAAGAACCATACCACACC
TCTGATGAAGTCTGTCCAATGCTGGAAGCAGAAATGTGCGACCGTGCTGCTGGAGCACGGCGCTGATCCG
AACATTAGAGACAGCAGTGGCAACAGTGCCTTGCACTACGCTGTGTACAACGGGCATCAGGAGATGGCCT
CCCTACTGCTTCAGTACAACGCTGATATCGAACAAAAAACCAAGGATGGCTTCACACCACTGTTGCTGGC
ACTCCGAGAAAAGCGGGTGGAGGTGGCAGAGTTTTTAGTAAGAATGGGAGCAGACATACACGTGGTAGAT
GAGCTGCAAAGAAACACCTTGATATACGCTATAAGATGTGGATCAAAAGATCTGTCTGTATTACTCCTTG
AGAAAGGTATTGACTTCTTCTATAAGGATGTCTTCGGATGGACAGCATTACGCTACGCTATTGAAGGCCA
CTGTACTTTTAGACAGACACTTCTGGATTTTGAAGAAAGTCTACATAGTAACAAAAAAGATAAGGAACCA
GAACTACAAGTGGAGCCCAGTACCTCCTGCATTTTAGCAAAACAAATAGATGCTGGAAATGACTCACTAG
CAAGGATCTCCAGCTGTCCTAGCCCTGAGACTCCTGTGCTTACAATGAAGGAAGACGAGAACAGTGATGC
CAGGAGTAACTCGGAGAGCAAGCCTCCTAACTGTGCTGGCAATTCACCGGCGGCTATAGACAAAGCATTT
GGAAATAGAGGAAAAAGAACTGTGGAAGCATGGGTTGAGAAAGATCCATCTTCAGAGTCTGCTGCCGAAG
TCAGAGACTCTGTTACAAATGAAGCAGTGGAAAGGATCAAGCTGTTGCCTTCAGAAACAGAGTTAGAATT
GATGTCAGTAGAAGAAGATGTGTCTCATGAAAGTGAAAATGACCACCCTTTGAGAGAATCGGAGCATCTT
CCAAAGATCAAGGTTGGCCATTCATCTCGTTCAGGATATCAAATGGGAAAAATGAATATAAATCGACAAA
TGAAAGGTAGGATTAACATTTTATTAAAAATTTATGTGATCACTTACTTATTCAAAACAGGTCACTGTTA
CATGATACTAAAACATTATTGA

Translation (473 aa):
MSFSMKKIFGAKEKTPLGFCDAPQMTVSEFFFGENPNYPKYHTTYRPLGHIHRVAAEGDAARMEILLTLG
QCNVYHRDRKDRTALHFACVYGRLPVVTILVKNNCEIDALDKNHTTPLMKSVQCWKQKCATVLLEHGADP
NIRDSSGNSALHYAVYNGHQEMASLLLQYNADIEQKTKDGFTPLLLALREKRVEVAEFLVRMGADIHVVD
ELQRNTLIYAIRCGSKDLSVLLLEKGIDFFYKDVFGWTALRYAIEGHCTFRQTLLDFEESLHSNKKDKEP
ELQVEPSTSCILAKQIDAGNDSLARISSCPSPETPVLTMKEDENSDARSNSESKPPNCAGNSPAAIDKAF
GNRGKRTVEAWVEKDPSSESAAEVRDSVTNEAVERIKLLPSETELELMSVEEDVSHESENDHPLRESEHL
PKIKVGHSSRSGYQMGKMNINRQMKGRINILLKIYVITYLFKTGHCYMILKHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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