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Report for CCDS40563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40563.1 Public Mus musculus 9 Matcap2 23 108 98 CCDS HistoryNCBI Gene:68283Re-query CCDS DB by CCDS ID:40563.1Re-query CCDS DB by GeneID:68283See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058868.8 ENSMUSP00000062120.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058868.8Link to Ensembl Protein Viewer:ENSMUSP00000062120.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058868Re-query CCDS DB by Protein ID:ENSMUSP00000062120
Original member NCBI NM_026739.2 NP_081015.1 Updated not alive Link to Nucleotide Sequence:NM_026739.2Link to Protein Sequence:NP_081015.1Re-query CCDS DB by Nucleotide ID:NM_026739Re-query CCDS DB by Protein ID:NP_081015
Current member NCBI NM_026739.3 NP_081015.1 Accepted alive Link to Nucleotide Sequence:NM_026739.3Link to Protein Sequence:NP_081015.1Re-query CCDS DB by Nucleotide ID:NM_026739Re-query CCDS DB by Protein ID:NP_081015Link to BLAST:NP_081015.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081015.1 519 Q7TQE7-1 519 100% 0 0

Chromosomal Locations for CCDS 40563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22411725 22411749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22424113 22424807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22430356 22430499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22431676 22431808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22435095 22435400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22439867 22439964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22444072 22444230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGCTGGAGTCTATTCGCGTAACGGAAAAGCTTCACTGGCCTGAACATGAACTTGCTAAGAAGTTTGTTC
TAAATGCAGAAGAGGCATTGATCACTGACAGCAAAAGAAGCTTTTCGAGTTTGTCCTCTGGGATTCTCAA
GGACACTTTCACAACTGGAACCAGTAGTTACAATGTTCTACTACAGAGCAAGGAGGAGAAAAAGCACCGT
TCACAAAAGCGGTTTTCCTCTGCCAGCTCCAAACAACATAGGAAGCCCAGCAAATCTCCTAGCTCCTCTC
ATAGCAAAGATCCTAGCAGGATGACAGCCCTGGTGCCTGGGACAGGCGCTGGCACTTGGTACTGCCTAGA
CGGGCAGTCTGCTGTTTTTGTTACTAGCTCAGTACCAAGTCCTGTAAAGTTCACCCGTGATATCTCTATT
ACAGGAAGCGGCCTAGCACTGCCACCTAAACCAAAAAGCAAGGTCAAACGACGCAATCTGACCCGGCTTC
CAAAGCCAAAGCAACAGCCTCAGCTGTGTAGAAGCTTTGAGAGAGGAGATGACATTTCTGGGAAAAAGCT
TTGTATATTGACTGCTATAAAGCCCATCAACCTGGAGAAGGAAAAGCTGCGGTTCTTCAAGTCGGACTAT
ACTTACAACCCTCAGTTTGAGTATGCCAATCCCACTCTGCCAGGGGTGTTAGCCAAACACAGCAACGCCT
CTGACCGGTTTCTTAAGCAGTCCATCAATATTATGGAGCTGACTTTACAAAAATATGGAAGTTATGAAAA
ATTTGAACAAGCTACTGGTGGTAGCTTGTTGTCTAAAACTCGAATCTGGAGTCATGTTAGAAAGTACATG
GTGAAGGAAGGCTGCCTGGGAGAGATTGTAGTTCATCTCACCGAAGACCTGCTTTCCAGGGCATCCATGA
CGGTAGTAAACGGATGCCCGACTCTAACCATCAATATTTCTACTGCACGAGAGCACTGGCTGGAGGGCAT
GCTGAGGCACGAGATAGGCACACATTATTTTCGGGGTATTAACAACCTTCAGCAACCGTGGAACAGTTGG
ATTGGCCGAAAAAAACATGAGCTAAAGCCCAACAACCCAACGGAGGAAGGGCTGGCAAGCATCCACAGTG
TCCTGTTCAGAAAAGACCCCTTCCTGTGGAGGGCCGCTCTCCTGTACTACACGGTGTATAAAGCCAGCCA
CATGTCCTTCTGTGAACTCTTCAAAGACATTGGCAAGTTTGTCAAGGACCCTAATACAAGATGGGACTAT
TGTGTAAGAGCCAAGAGAGGGTGGACTGACACTTCTGAGCCCGGGTGTTTCAGTAAGGACCAGGTCTACT
TGGATGGAGTCCTTCAAATCCTGCGATTCAGAGAGTCCATAGACTTCCATCTGCTGACTGCCCTGGGCAA
GGTATCTTACGAAGATGTGGATCGCTTAAAAGAATTGGCAGTTACTGAAAACATGCGAGTCCCACATTTC
CTTCATGATCACAGCCGGTACATGGAGCACTTAGAGAGGATCATGGAGGTGAACGAGCTGACAGACGCTG
AGCTGAAAAACCTCATCTAA

Translation (519 aa):
MLESIRVTEKLHWPEHELAKKFVLNAEEALITDSKRSFSSLSSGILKDTFTTGTSSYNVLLQSKEEKKHR
SQKRFSSASSKQHRKPSKSPSSSHSKDPSRMTALVPGTGAGTWYCLDGQSAVFVTSSVPSPVKFTRDISI
TGSGLALPPKPKSKVKRRNLTRLPKPKQQPQLCRSFERGDDISGKKLCILTAIKPINLEKEKLRFFKSDY
TYNPQFEYANPTLPGVLAKHSNASDRFLKQSINIMELTLQKYGSYEKFEQATGGSLLSKTRIWSHVRKYM
VKEGCLGEIVVHLTEDLLSRASMTVVNGCPTLTINISTAREHWLEGMLRHEIGTHYFRGINNLQQPWNSW
IGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYKASHMSFCELFKDIGKFVKDPNTRWDY
CVRAKRGWTDTSEPGCFSKDQVYLDGVLQILRFRESIDFHLLTALGKVSYEDVDRLKELAVTENMRVPHF
LHDHSRYMEHLERIMEVNELTDAELKNLI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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