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Report for CCDS38076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38076.1 Public Mus musculus 2 Rabl6 23 108 98 CCDS HistoryNCBI Gene:227624Re-query CCDS DB by CCDS ID:38076.1Re-query CCDS DB by GeneID:227624See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058137.8 ENSMUSP00000058746.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058137.8Link to Ensembl Protein Viewer:ENSMUSP00000058746.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058137Re-query CCDS DB by Protein ID:ENSMUSP00000058746
Original member Current member NCBI NM_001024616.2 NP_001019787.2 Accepted alive Link to Nucleotide Sequence:NM_001024616.2Link to Protein Sequence:NP_001019787.2Re-query CCDS DB by Nucleotide ID:NM_001024616Re-query CCDS DB by Protein ID:NP_001019787Link to BLAST:NP_001019787.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019787.2 725 Q5U3K5 725 100% 0 0

Chromosomal Locations for CCDS 38076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25583791 25583988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25584103 25584161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25584776 25584944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25585308 25585536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25585624 25585833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25586868 25587018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25587275 25587627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25588609 25588712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25592298 25592403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25592767 25592907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25596433 25596524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25598145 25598197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25601351 25601398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25602421 25602555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25608113 25608242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGTTCTCCGCGTTGAAGAAGCTGGTGGGGTCGGAGCAGGCCCCAGGCCGGGACAAGAACATCCCCGCCG
GGCTGCAGTCCATGAACCAGGCGCTGCAGAGGCGCTTCGCTAAGGGGGTTCAGTATAACATGAAGATTGT
GATCCGGGGTGACAGGAACACGGGCAAGACAGCTCTGTGGCATCGACTGCAGGGCAAGAAGTTTGTGGAA
GAATACATCCCCACACAGGAGATCCAGGTCACCAGCATCCATTGGAACTACAAAACTACTGATGATGTAG
TGAAAGTTGAAGTCTGGGATGTAGTTGACAAAGGAAAGTGTAAAAAACGAGGAGATGGCTTGAAGACGGA
AAATGACCCCCAGGAGGCAGAGTCTGAATTGGCCCTGGATGCTGAGTTTCTGGATGTGTACAAGAACTGT
AATGGAGTGGTCATGATGTTTGACATCACTAAGCAGTGGACCTTCAATTATGTTCTCCGGGAGCTTCCCA
AAGTGCCAACCCATGTGCCGGTGTGTGTGCTGGGCAACTACCGTGACATGGGCGAGCATCGAGTCATTCT
ACCAGACGATGTGCGGGACTTCATTGAGCATCTGGACAGACCTCCAGGTTCCTCCTATTTCCGCTATGCT
GAATCTTCCATGAAGAACAGCTTTGGTCTAAAGTACCTGCATAAGTTCTTCAACATCCCATTTTTGCAAC
TACAGAGGGAGACACTACTGAGGCAGCTGGAGACAAACCAACTAGACATCGATGCCACACTAGAGGAGCT
ATCAGTGCAGCAGGAAACCGAGGACCAGAACTACAGCATCTTCCTTGAAATGATGGAGGCTCGAAGTCGA
GGCCACGCATCCCCTTTGGCAGCCAATGGGCAGAGCCCATCCTCAGGCTCCCAGTCGCCAGTTGTGCCTC
CAAGTGCTGTATCCACAGGGAGTTCCAGCCCCAGCACACCCCAGCCTGCCCCTCAGCTGTCTCTAGGTGT
CTCCTCCACCTGTCCCTCAGCACCATCTCCTGTACCCTCTTTGGAGGCCATGCCCTCCTCTGTACACTCT
TCAGCCCCAGCCCCAACCCCAGCTCCAGCCCCAGCTCCAGCCCAGCGTCGCAGTATCATCTCTCGGCTGT
TTGGGACCTCACCAGCTGCAGAAGTGACCCCTTCACCTCCAGAGCCAGCTCCAGCTCTCGAAGCTCCAGC
AAGAGTCCAGAATGTTGAGGATTTTGTCCCTGAAGATGGCCTTGACCGAAGCTTCCTGGAAGACACAAGT
GTGCCTAAAGACAAGAAAGTTGGAGCCAAAGGTCCCCAGCAGGATAGTGACAGTGACGATGGGGAGGCCC
TAGGAGGGAACCCAATGGTGGCAGGTTTCCAGGATGATGTGGACATAGAAGACCAGACACATGGCAAATC
CCTGCTGCCCTCGGATCCCATGCCCAGTAAGAACATCAGTCTCTCAAGTGAGGAGGAAGCCGAAGGACTG
GCAGGCCACCCTAGAGTGGCCCCTCAGCAATGCTCAGAGCCTGAGACTAAATGGTCCTCCACCAAGGTCT
CACATCCACAAAAGAAGAGAGCTCCCACGAGAGGCACGCCACCGTGGTCAGATGGTCTCACCACTGATGA
CTCTGAAAGACCCCAGGAAGGGAAGGACAAACAGGTGTCATCAGAGAGTGATCCTGAGGGGCCCATTGCT
GCCCAGATGCTGTCCTTCGTCATGGATGACCCAGACTTTGAAAGTGATGAATCAGATACACAGAGGAGAA
TGGGCAGGTTTCCAGTAAGAGAAGACCTCTCTGATGTAACTGATGAGGACACTGGCCCTGCTCAGCCACC
TCCACCTTCCAAGCTCCCAGGTGCTTTCAGACTGAAGAATGACTCCGATCTCTTTGGGCTGGGCCTAGAG
GAGATGGGACCTAAGGAAAGCAGTGACGAAGATAGAGACAGCAAACTTCCCTCTAAGGAGAAGAAGAAAA
AGAAGAAGAAAAGCAAAGAGGAGGAAGAAAAGACTACAAAAAAGAAAAGCAAACACAAGAAGAGCAAGGA
CAAGGAGGAGGGCAAGGAGGATCGGAAGAAGAAGAGGAAGCCCCCTCGGAGCAAAGAGCAGAAGGCTGCA
GATGAGCTGGAAGCCTTCCTGGGGGGTGGGGCCCCTGGCAGCCGCCACCCTGGAGGTGGGGACTATGAGG
AGCTCTAA

Translation (725 aa):
MFSALKKLVGSEQAPGRDKNIPAGLQSMNQALQRRFAKGVQYNMKIVIRGDRNTGKTALWHRLQGKKFVE
EYIPTQEIQVTSIHWNYKTTDDVVKVEVWDVVDKGKCKKRGDGLKTENDPQEAESELALDAEFLDVYKNC
NGVVMMFDITKQWTFNYVLRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIEHLDRPPGSSYFRYA
ESSMKNSFGLKYLHKFFNIPFLQLQRETLLRQLETNQLDIDATLEELSVQQETEDQNYSIFLEMMEARSR
GHASPLAANGQSPSSGSQSPVVPPSAVSTGSSSPSTPQPAPQLSLGVSSTCPSAPSPVPSLEAMPSSVHS
SAPAPTPAPAPAPAQRRSIISRLFGTSPAAEVTPSPPEPAPALEAPARVQNVEDFVPEDGLDRSFLEDTS
VPKDKKVGAKGPQQDSDSDDGEALGGNPMVAGFQDDVDIEDQTHGKSLLPSDPMPSKNISLSSEEEAEGL
AGHPRVAPQQCSEPETKWSSTKVSHPQKKRAPTRGTPPWSDGLTTDDSERPQEGKDKQVSSESDPEGPIA
AQMLSFVMDDPDFESDESDTQRRMGRFPVREDLSDVTDEDTGPAQPPPPSKLPGAFRLKNDSDLFGLGLE
EMGPKESSDEDRDSKLPSKEKKKKKKKSKEEEEKTTKKKSKHKKSKDKEEGKEDRKKKRKPPRSKEQKAA
DELEAFLGGGAPGSRHPGGGDYEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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