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Report for CCDS85027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85027.1 Public Mus musculus 6 Copg2 23 108 98 CCDS HistoryNCBI Gene:54160Re-query CCDS DB by CCDS ID:85027.1Re-query CCDS DB by GeneID:54160See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048774.12 ENSMUSP00000038368.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048774.12Link to Ensembl Protein Viewer:ENSMUSP00000038368.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048774Re-query CCDS DB by Protein ID:ENSMUSP00000038368
Original member NCBI NM_017478.3 NP_059506.1 Updated not alive Link to Nucleotide Sequence:NM_017478.3Link to Protein Sequence:NP_059506.1Re-query CCDS DB by Nucleotide ID:NM_017478Re-query CCDS DB by Protein ID:NP_059506
Current member NCBI NM_017478.4 NP_059506.1 Accepted alive Link to Nucleotide Sequence:NM_017478.4Link to Protein Sequence:NP_059506.1Re-query CCDS DB by Nucleotide ID:NM_017478Re-query CCDS DB by Protein ID:NP_059506Link to BLAST:NP_059506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059506.1 871 Q9QXK3-1 871 100% 0 0

Chromosomal Locations for CCDS 85027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30748857 30748987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30749406 30749504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30749761 30749899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30750538 30750635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30809559 30809730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30810331 30810470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30810925 30810987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30811593 30811718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30812744 30812847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30813711 30813786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30815931 30816174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30816743 30816838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30824368 30824556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30825627 30825694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30826138 30826271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30858738 30858895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30859888 30859974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30861368 30861460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30863535 30863610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30885580 30885659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30890601 30890672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30894847 30894927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30895542 30895594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30896661 30896697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGATTAAAAAATTCGACAAGAAGGACGAGGAGTCTGGTAGTGGTTCCAATCCTTTCCAGCATTTGGAGA
AGAGTGCTGTCTTGCAGGAGGCACGCATATTCAACGAAACGCCCATCAATCCAAGAAGATGCTTGCATAT
CTTGACAAAGATTCTTTACTTACTCAACCAGGGTGAACACTTCGGAACTATGGAAGCTACAGAAGCCTTC
TTTGCAATGACTCGATTGTTTCAATCTAATGATCAAACGCTGAGGCGGATGTGCTACCTCACCATCAAGG
AAATGGCCACCATCTCTGAGGATGTGATCATTGTCACAAGCAGTCTGACCAAGGACATGACTGGAAAGGA
AGATGTATACCGAGGCCCAGCCATCAGGGCTCTCTGCAGAATCACAGATGGAACAATGTTGCAAGCCGTT
GAAAGGTACATGAAGCAGGCCATTGTGGATAAAGTATCCAGTGTAGCCAGCTCAGCGCTGGTCTCTTCCT
TACACATGATGAAGATAAGCTATGATGTGGTTAAACGATGGATAAATGAAGCCCAAGAAGCTGCATCAAG
TGACAATATCATGGTGCAGTACCATGCACTAGGAGTGCTCTATCACCTTAGGAAGAATGATCGGCTTGCT
GTCTCCAAGATGTTAAATAAGTTTACCAAATCTGGTCTCAAATCACAGTTTGCATACTGTATGCTGATTC
GAATTGCTAGTCGCTTACTGAAAGAAAGCGAGGATGGTCATGAAAGTCCACTCTTTGATTTCATTGAGAG
CTGCTTGCGAAATAAACACGAAATGGTTATTTATGAAGCTGCTTCTGCCATTATTCATCTTCCCAACTGT
ACTGCAAGAGAGCTGGCACCTGCTGTCTCAGTTCTTCAACTTTTCTGTAGCTCTCCTAAACCAGCCTTGA
GATATGCAGCTGTGAGGACCCTGAACAAGGTGGCAATGAAGCACCCCTCTGCTGTTACTGCCTGCAATCT
GGACTTAGAAAACTTAATCACAGACTCAAACAGGAGCATTGCTACCCTGGCCATTACAACATTGCTCAAA
ACAGGAAGCGAGAGCAGTGTAGACAGGCTTATGAAGCAGATATCTTCTTTTGTGTCTGAAATCTCAGATG
AGTTCAAGGTGGTGGTCGTGCAGGCCATCAGTGCTCTCTGTCACAAGTACCCTCGGAAGCACAGCGTCAT
GATGACTTTTCTTTCCAACATGCTTCGAGATGATGGAGGTTTTGAATACAAAAAGGCCATTGTGGACTGC
ATAATCAGCATTGTGGAAGAGAACCCTGAGAGTAAAGAAGCTGGTCTAGCCCACCTCTGTGAATTCATTG
AGGACTGTGAACATACCGTTCTGGCTACTAAAATTCTCCACTTATTGGGCAAAGAGGGCCCTAGAACTCC
TGTTCCCTCCAAGTATATCAGATTCATTTTTAATAGGGTGGTCCTGGAGAATGAGGCTGTCAGAGCTGCT
GCTGTGAGTGCTTTGGCTAAATTTGGGGCTCAGAATGAGAGCCTTCTCCCCAGCATCCTTGTACTCTTAC
AAAGGTGTATGATGGATACTGATGATGAGGTACGGGACCGAGCTACCTTCTACCTGAATGTGCTACAGCA
GAGACAGATGGCCCTGAATGCTACATATATCTTCAATGGTCTGACAGTCTCTATACCAGGGATGGAAAAG
GCCTTACACCAGTATACATTGGAGCCTTCAGAAAAACCCTTTGATATGAAGTCAATTCCTCTTGCTATGG
CTCCTGTCTTTGAGCAGAAGTCAGAAATTACACTTGTGACTCCTAAGCCAGAGAAGTTGGCTCCTTCCAG
GCAAGACATTTTCCAAGAACAGTTAGCTGCCATTCCTGAGTTTATGAACCTGGGACCCTTGTTTAAGTCT
TCTGAGCCTGTGCAGCTTACAGAAGCAGAGACAGAGTATTTCGTTCGCTGTGTGAAGCACATGTTTACTG
ACCATATTGTATTCCAGTTTGACTGTACCAACACTCTAAATGACCAGCTGCTGGAGAAAGTAACAGTGCA
GATGGAACCATCCGATTCCTATGAAGTGCTGTGCTGTATCCCAGCTCCCAGCCTCCCTTACAATCAGCCA
GGAATATGCTACACACTTGTTCGATTGCCAGATGAAGATCCTACAGCAGTTGCAGGCACCTTTAGCTGTA
CCATGAAGTTCACAGTCCGGGATTGTGACCCTAATACTGGAGTTCCAGATGAAGATGGATATGATGATGA
ATATGTGCTGGAAGATCTTGAAGTAACTGTGTCTGATCATATTCAGAAGATACTAAAACCTAACTTCGCT
GCTGCCTGGGAAGAGGTGGGAGATGCCTTTGAAAAAGAAGAAACCTTTGCCCTGAGCTCTACAAAAACCC
TTGAAGAAGCTGTCAACAACATCATCACATTTCTTGGTATGCAGCCATGTGAGAGGTCAGATAAAGTCCC
CGAGAATAAGAACTCCCACTCCCTCTATCTAGCAGGTGTATACAGAGGTGGCTATGACTTATTGGTGCGG
TCCAGGCTGGCCCTAGCTGATGGAGTGACCATGCAGGTGACTGTGAGAAGCAAAGAGAGAACGCCTGTGG
ATGTTATCTTGGCTTCTGTGGGATAA

Translation (871 aa):
MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAF
FAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAV
ERYMKQAIVDKVSSVASSALVSSLHMMKISYDVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLA
VSKMLNKFTKSGLKSQFAYCMLIRIASRLLKESEDGHESPLFDFIESCLRNKHEMVIYEAASAIIHLPNC
TARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLK
TGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCHKYPRKHSVMMTFLSNMLRDDGGFEYKKAIVDC
IISIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAA
AVSALAKFGAQNESLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSIPGMEK
ALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVTPKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKS
SEPVQLTEAETEYFVRCVKHMFTDHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLCCIPAPSLPYNQP
GICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPDEDGYDDEYVLEDLEVTVSDHIQKILKPNFA
AAWEEVGDAFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVR
SRLALADGVTMQVTVRSKERTPVDVILASVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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