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Report for CCDS38526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38526.1 Public Mus musculus 3 S100a10 23 108 98 CCDS HistoryNCBI Gene:20194Re-query CCDS DB by CCDS ID:38526.1Re-query CCDS DB by GeneID:20194See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045756.13 ENSMUSP00000036949.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045756.13Link to Ensembl Protein Viewer:ENSMUSP00000036949.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045756Re-query CCDS DB by Protein ID:ENSMUSP00000036949
Original member Current member EBI ENSMUST00000170612.1 ENSMUSP00000130712.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170612.1Link to Ensembl Protein Viewer:ENSMUSP00000130712.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170612Re-query CCDS DB by Protein ID:ENSMUSP00000130712
Original member Current member NCBI NM_009112.2 NP_033138.1 Accepted alive Link to Nucleotide Sequence:NM_009112.2Link to Protein Sequence:NP_033138.1Re-query CCDS DB by Nucleotide ID:NM_009112Re-query CCDS DB by Protein ID:NP_033138Link to BLAST:NP_033138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033138.1 97 P08207 97 100% 0 0

Chromosomal Locations for CCDS 38526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 93560964 93561095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 93564243 93564404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGCCATCCCAAATGGAGCACGCCATGGAAACCATGATGCTTACGTTTCACAGGTTTGCAGGCGACAAAG
ACCACTTGACAAAGGAGGACCTGAGAGTGCTCATGGAACGGGAGTTCCCTGGGTTTTTGGAAAATCAAAA
GGACCCTCTGGCTGTGGACAAAATAATGAAGGACCTGGACCAGTGCCGAGATGGCAAAGTGGGCTTCCAG
AGCTTTCTATCACTAGTGGCAGGGCTCACCATTGCATGCAATGACTATTTTGTAGTAAACATGAAGCAGA
AGGGGAAGAAGTAG

Translation (97 aa):
MPSQMEHAMETMMLTFHRFAGDKDHLTKEDLRVLMEREFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ
SFLSLVAGLTIACNDYFVVNMKQKGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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