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Report for CCDS88280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88280.1 Public Mus musculus 11 Slc39a11 23 108 98 CCDS HistoryNCBI Gene:69806Re-query CCDS DB by CCDS ID:88280.1Re-query CCDS DB by GeneID:69806See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042657.15 ENSMUSP00000037331.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042657.15Link to Ensembl Protein Viewer:ENSMUSP00000037331.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042657Re-query CCDS DB by Protein ID:ENSMUSP00000037331
Original member Current member NCBI NM_001362938.1 NP_001349867.1 Accepted alive Link to Nucleotide Sequence:NM_001362938.1Link to Protein Sequence:NP_001349867.1Re-query CCDS DB by Nucleotide ID:NM_001362938Re-query CCDS DB by Protein ID:NP_001349867Link to BLAST:NP_001349867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349867.1 370 Q8BWY7-2 370 100% 0 0

Chromosomal Locations for CCDS 88280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113246417 113246495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113247720 113247878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113250468 113250566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113305885 113305954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113369728 113369898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113463972 113464095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113522901 113523005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113523466 113523624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113559511 113559549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113562006 113562113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGCTCCAAGGTTACAGCTCCGTGGTCCAGGCCTTGCTGGGGACCTTCTTCACCTGGGCAATGACAGCAG
CCGGGGCAGCTCTCGTGTTCATATTCTCCAGCGGGCAGAGGCGGATCTTAGACGGAAGCCTGGGCTTTGC
CGCAGGGGTCATGTTAGCGGCTTCCTACTGGTCGCTGCTTGCACCAGCGGTGGAGATGGCGACATCCTCG
GGGGGCTTCGGAGCCTTTGCCTTCTTCCCAGTGGCTGTTGGCTTCACCCTGGGGGCCGCCTTTGTCTACC
TGGCTGACCTCCTGATGCCTCACCTGCTCCAGGTTTCCTTCCTACCATCTGGAGACTGTAAGATGCCAAC
AGCAACGAAAACACCACTGTTGGGGAGAACCAGAGCTGTGGAGCTTCTGGGCGGGAACCAGGGTGCTACA
GAAGACCCCCAGACAGCCCTGGCGCTGAACTTGGACCCTGCATTGATGAAGAAGTCTGATCCCAGGGACC
CCACTTCGCTGCTCTTCCCGGAGAGTGAACTTTCCATCCGGATAGACAAGCGTGAGAATGGCGAGGTATA
CCAGAGGAAGAAGGTGGCAGCTACTGACCTCGCAGAGGGCGTGGCCCCCTCAGGATCGATGCACGGGAGC
TCAGGGCAGCCTGGGGGGAGCAGCTGGAGGAGGATTGCTTTGCTCATCCTGGCCATCACCATACACAACA
TTCCAGAGGGTCTTGCTGTTGGCGTAGGATTTGGAGCAGTAGAAAAGACTGCATCTGCCACCTTCGAGAG
TGCCAGGAATCTGGCCATTGGAATTGGGATCCAGAATTTCCCAGAGGGCCTGGCTGTCAGCCTTCCTCTG
CGTGGAGCAGGCTTCTCTACCTGGAAAGCTTTCTGGTATGGACAGCTGAGCGGCATGGTGGAGCCCTTGG
CTGGGGTCTTTGGAGCATTTGCGGTGGTACTGGCTGAGCCCATCCTGCCCTATGCACTGGCCTTTGCTGC
TGGTGCCATGGTCTACGTGGTCATGGATGACATCATCCCCGAGGCCCAGATCAGTGGCAACGGGAAGCTG
GCATCCTGGGCCTCCATCCTGGGATTTGTGGTGATGATGTCCCTTGATGTGGGCCTCGGCTAG

Translation (370 aa):
MLQGYSSVVQALLGTFFTWAMTAAGAALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAPAVEMATSS
GGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLLQVSFLPSGDCKMPTATKTPLLGRTRAVELLGGNQGAT
EDPQTALALNLDPALMKKSDPRDPTSLLFPESELSIRIDKRENGEVYQRKKVAATDLAEGVAPSGSMHGS
SGQPGGSSWRRIALLILAITIHNIPEGLAVGVGFGAVEKTASATFESARNLAIGIGIQNFPEGLAVSLPL
RGAGFSTWKAFWYGQLSGMVEPLAGVFGAFAVVLAEPILPYALAFAAGAMVYVVMDDIIPEAQISGNGKL
ASWASILGFVVMMSLDVGLG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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