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Report for CCDS51416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51416.1 Public Mus musculus 5 Gm9758 23 108 98 CCDS HistoryNCBI Gene:381714Re-query CCDS DB by CCDS ID:51416.1Re-query CCDS DB by GeneID:381714See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035980.8 ENSMUSP00000041597.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035980.8Link to Ensembl Protein Viewer:ENSMUSP00000041597.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035980Re-query CCDS DB by Protein ID:ENSMUSP00000041597
Original member Current member NCBI NM_198666.4 NP_941068.1 Accepted alive Link to Nucleotide Sequence:NM_198666.4Link to Protein Sequence:NP_941068.1Re-query CCDS DB by Nucleotide ID:NM_198666Re-query CCDS DB by Protein ID:NP_941068Link to BLAST:NP_941068.1

Chromosomal Locations for CCDS 51416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 14910451 14910594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14911340 14911520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14912150 14912293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14913514 14913673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14914691 14914829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCCTTGTTTGCCCGACTCTGCAGACTTTTTCAGAGAGCCAATGTGGATGGGAGAGAGAACAGAGAGG
GGAGGAAGGATGCTGACATTCCATCTGAGAGGAATGAAGGACGAAGGAGGGGGACTTGGCGAATGTGGAT
GGCTCTCAGACAGACATCATCTCCTGTACCTGTCATAAGCAAGAAGCAGTTTGAGAAGGAAGAGAAAAAG
CTGATCAAAGAGATCCAGCTCACTACCGAGGAGACAAATGAGCTGAGAGATCGCCTGACCTACGTGACTG
AGGGATCCATGAACAAGAGGCCCTACCACAGGCAAAATCCCCTTTATGAAAAATTGAAGTTAAAGGAGAA
GGAGATCATGACATTTCTACACAACTTAGAGATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGAGCTC
AAGAAGGAGACACATTTCTATCGTAACCTGCACAGCCGGCTCCTGATGGAGGAGAATCTTATAAAGAAGA
AGTCGATGACATTACAGCAGGAGAGCAAGGAAGTACAGGCTGATTGGGCCATCATTCACCAACGTTTGGT
GGAATTGAACCTGAGTGGAAAAGACGAACAGGAGAACAGCAATCTTGAGACTCCAGAATATCAGGTCTCA
GAAGCTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAGGCC
AGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCGGATGAATCTTCTTCCATATAA

Translation (255 aa):
MALFARLCRLFQRANVDGRENREGRKDADIPSERNEGRRRGTWRMWMALRQTSSPVPVISKKQFEKEEKK
LIKEIQLTTEETNELRDRLTYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQEL
KKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSGKDEQENSNLETPEYQVS
EAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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