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Report for CCDS41195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41195.1 Public Mus musculus X Pdha1 23 108 98 CCDS HistoryNCBI Gene:18597Re-query CCDS DB by CCDS ID:41195.1Re-query CCDS DB by GeneID:18597See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41195.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033662.8 ENSMUSP00000033662.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033662.8Link to Ensembl Protein Viewer:ENSMUSP00000033662.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033662Re-query CCDS DB by Protein ID:ENSMUSP00000033662
Original member Current member NCBI NM_008810.3 NP_032836.1 Accepted alive Link to Nucleotide Sequence:NM_008810.3Link to Protein Sequence:NP_032836.1Re-query CCDS DB by Nucleotide ID:NM_008810Re-query CCDS DB by Protein ID:NP_032836Link to BLAST:NP_032836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032836.1 390 P35486 390 100% 0 0

Chromosomal Locations for CCDS 41195.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 160123783 160123947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160124519 160124627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160126194 160126261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160127291 160127362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160127573 160127728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160128465 160128557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160129410 160129501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160130109 160130235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160132069 160132242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160133173 160133232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160138256 160138312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGAGGAAGATGCTTGCCGCTGTATCCCGCGTGTTGGCAGGCTCTGCGCAGAAGCCGGCAAGCCGAGTGC
TGGTTGCTTCCCGTAATTTTGCAAATGATGCTACATTTGAGATTAAGAAATGTGACCTTCATCGGCTAGA
AGAGGGCCCCCCAGTCACCACAGTGCTCACCAGAGAGGATGGGCTCAAGTACTACAGGATGATGCAGACT
GTGCGCCGGATGGAGCTAAAGGCGGATCAGCTGTATAAGCAGAAAATCATTCGTGGTTTCTGTCACTTGT
GTGATGGTCAGGAAGCCTGCTGCGTGGGCCTGGAGGCTGGCATAAACCCTACGGACCACCTCATCACTGC
CTATCGAGCACATGGCTTCACCTTCACTCGGGGCCTGCCTGTGCGAGCAATTCTTGCAGAGCTAACAGGA
CGAAGAGGAGGTTGTGCTAAAGGGAAAGGCGGGTCAATGCACATGTACGCCAAGAACTTCTATGGAGGCA
ACGGCATCGTTGGAGCTCAGGTGCCCCTGGGAGCAGGAATTGCCCTGGCCTGCAAGTACAATGGAAAAGA
TGAGGTCTGTTTGACATTATACGGCGATGGTGCTGCTAATCAGGGTCAGATCTTTGAAGCTTACAATATG
GCAGCACTGTGGAAATTACCTTGCATTTTTATCTGTGAGAACAACCGCTATGGCATGGGGACGTCTGTTG
AGAGAGCAGCAGCCAGCACGGACTACTACAAAAGAGGAGATTTTATTCCTGGACTCAGGGTAGATGGAAT
GGATATCTTGTGCGTCCGAGAGGCAACAAAGTTTGCGGCTGCCTATTGCAGGTCTGGTAAGGGGCCCATC
CTGATGGAGCTCCAGACTTACCGCTACCATGGACACAGCATGAGTGACCCTGGAGTAAGCTACCGCACTC
GAGAAGAAATCCAGGAAGTAAGAAGTAAGAGTGACCCTATTATGCTTCTCAAGGATAGAATGGTGAACAG
CAATCTTGCAAGTGTTGAAGAATTAAAGGAGATTGATGTGGAAGTGAGGAAAGAAATCGAGGATGCTGCC
CAGTTTGCCACGGCTGATCCTGAGCCCCCGTTGGAGGAACTAGGCTATCACATCTACAGCAGTGATCCTC
CCTTTGAAGTGCGTGGTGCCAACCAGTGGATCAAGTTTAAGTCAGTCAGTTAA

Translation (390 aa):
MRKMLAAVSRVLAGSAQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQT
VRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLPVRAILAELTG
RRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNM
AALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPI
LMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA
QFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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