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Report for CCDS18251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18251.1 Public Mus musculus 4 Orm1 23 108 98 CCDS HistoryNCBI Gene:18405Re-query CCDS DB by CCDS ID:18251.1Re-query CCDS DB by GeneID:18405See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030044.2 ENSMUSP00000030044.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030044.2Link to Ensembl Protein Viewer:ENSMUSP00000030044.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030044Re-query CCDS DB by Protein ID:ENSMUSP00000030044
Original member Current member NCBI NM_008768.2 NP_032794.1 Accepted alive Link to Nucleotide Sequence:NM_008768.2Link to Protein Sequence:NP_032794.1Re-query CCDS DB by Nucleotide ID:NM_008768Re-query CCDS DB by Protein ID:NP_032794Link to BLAST:NP_032794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032794.1 207 Q60590 207 100% 0 0

Chromosomal Locations for CCDS 18251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 63344598 63344714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63345069 63345211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63345421 63345491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63346040 63346147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63346282 63346385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63347970 63348050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCGCTGCACACGGTTCTTATCATATTGAGCCTTCTGCCGATGTTGGAAGCTCAGAACCCAGAACATG
CCAACTTCACCATAGGCGAACCTATCACCAATGAGACCCTGAGCTGGCTCTCTGACAAATGGTTTTTCAT
GGGTGCAGCTTTCAGAAAACTCGAGTACAGGCAGGCAATTCAAACAATGCAGAGTGAATTTTTTTACCTT
ACCACCAACTTGATAAACGACACAATAGAGCTTCGGGAGTCTCAAACAATAGGTGACCAGTGTGTCTATA
ACTCCACCCATCTAGGATTCCAGAGAGAAAATGGGACCTTCTCCAAGTATGAAGGAGGAGTAGAAACCTT
TGCCCACCTTATAGTGCTGAGGAAACATGGGGCCTTCATGCTTGCCTTTGACCTCAAGGATGAGAAGAAA
CGGGGACTGTCCCTCTATGCCAAAAGGCCAGATATCACCCCGGAGCTGCGGGAAGTATTCCAGAAGGCTG
TCACACACGTGGGCATGGATGAATCAGAAATCATATTTGTCGACTGGAAAAAGGATAGGTGCGGTCAGCA
GGAGAAGAAGCAGCTTGAGTTGGGGAAGGAGACCAAGAAAGATCCTGAGGAAGGCCAGGCATGA

Translation (207 aa):
MALHTVLIILSLLPMLEAQNPEHANFTIGEPITNETLSWLSDKWFFMGAAFRKLEYRQAIQTMQSEFFYL
TTNLINDTIELRESQTIGDQCVYNSTHLGFQRENGTFSKYEGGVETFAHLIVLRKHGAFMLAFDLKDEKK
RGLSLYAKRPDITPELREVFQKAVTHVGMDESEIIFVDWKKDRCGQQEKKQLELGKETKKDPEEGQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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