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Report for CCDS40173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40173.1 Public Mus musculus 7 Fuom 23 108 98 CCDS HistoryNCBI Gene:69064Re-query CCDS DB by CCDS ID:40173.1Re-query CCDS DB by GeneID:69064See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026539.13 ENSMUSP00000026539.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026539.13Link to Ensembl Protein Viewer:ENSMUSP00000026539.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026539Re-query CCDS DB by Protein ID:ENSMUSP00000026539
Original member Current member NCBI NM_026928.4 NP_081204.2 Accepted alive Link to Nucleotide Sequence:NM_026928.4Link to Protein Sequence:NP_081204.2Re-query CCDS DB by Nucleotide ID:NM_026928Re-query CCDS DB by Protein ID:NP_081204Link to BLAST:NP_081204.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081204.2 153 Q8R2K1-1 153 100% 0 0

Chromosomal Locations for CCDS 40173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140099643 140099706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140099879 140099952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140101090 140101188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140101332 140101402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140101601 140101669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140102307 140102391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGTTGCGCTCAAGGGCATCCCGAAGGTGCTGTCTCCTGAGCTGTTGTTCGCGCTTGCGCGGATGGGGC
ATGGAGACGAAATTGTCCTTGCTGATGCGAACTTCCCTACCTCCTCCATCTGCCAGTGCGGACCTGTGGA
GATCCGAGCAGACGGCCTGGACATCCCACAGCTTCTGGAGGCTGTGCTGAGGCTCCTGCCCCTGGACACC
TACGTGGAAAGCCCGGCTGCTGTCATGGACCTGGTGCCCAGTGACAAGGAGAAGGGCCTGCAGACCCCGA
TATGGAAGCGTTATGAATCCCTTCTTCTCGAAGCTGACTGTAAAAAAACCCTGATGAAGCTAGAGAGATT
TGAATTTTATGAACGTGCAAAAAAGGCATTTGCTGTGGTTGCAACCGGGGAGATGGCACTCTATGGAAAC
ATCATCCTCAAGAAGGGAACTCTTGACCTCGGACCCTCATAG

Translation (153 aa):
MVALKGIPKVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPVEIRADGLDIPQLLEAVLRLLPLDT
YVESPAAVMDLVPSDKEKGLQTPIWKRYESLLLEADCKKTLMKLERFEFYERAKKAFAVVATGEMALYGN
IILKKGTLDLGPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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