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Report for CCDS28321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28321.1 Public Mus musculus 16 Cfap298 23 108 98 CCDS HistoryNCBI Gene:68001Re-query CCDS DB by CCDS ID:28321.1Re-query CCDS DB by GeneID:68001See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023694.10 ENSMUSP00000023694.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023694.10Link to Ensembl Protein Viewer:ENSMUSP00000023694.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023694Re-query CCDS DB by Protein ID:ENSMUSP00000023694
Original member Current member NCBI NM_026502.2 NP_080778.2 Accepted alive Link to Nucleotide Sequence:NM_026502.2Link to Protein Sequence:NP_080778.2Re-query CCDS DB by Nucleotide ID:NM_026502Re-query CCDS DB by Protein ID:NP_080778Link to BLAST:NP_080778.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080778.2 290 Q8BL95 290 100% 0 0

Chromosomal Locations for CCDS 28321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90925972 90926082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90926345 90926440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90927098 90927229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90927350 90927508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90929916 90929983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90930994 90931161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90934582 90934720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGTTGTGCTGCACGTGAAGAGAGGCGACGAGAGCCAGTTCTTACTGCAGGCGCCCGGGAGCACGGAGC
TGGAAGAGCTCACGGCGCAGGTGGCCCGCGTCTACAACGGGCGGCTGAAGGTGCACCGGCTCTGCTCAGA
GATGGAGGAGCTGGCGGAACACGGTGTCTTTCTGCCCCCTAATATGCAAGGGCTGACTGATGAGCAGATC
GAAGAGCTGAAACTGAAGGACGAGTGGGGGGAGAAGTGTGTGCCCAGTGGAGGGTCTGTTTTTACGAAGG
ACGAGATCGGGCGGAGGAACGGGCAAGCTCCAAATGAGAAAATGAAGCAGGTTTTAAAGAAGACGGTAGA
AGAAGCCAAGGCGATAGTGTCTAAGAAACAAGTAGAAGCTGGAGTCTTTGTTACCATGGAGATGGTGAAA
GATGCCTTGGACCAGCTTCGAGGTGCGGTCATGATCGTTTATCCCATGGGGCTGCCACCATACGATCCTA
TCCGGATGGAATTTGAAAATAAAGAAGATTTGTCAGGAACTCAGGCAGCCCTCGAAGTCATCCAGGAGTC
GGAGGCACAGCTGTGGTGGGCCGCCAAGGAGCTGAGAAGAACAAAGAAGCTTTCTGACTATGTGGGGAAA
AATGAGAAAACCAAAATCATCGTCAAGATCCAGCAGAGAGGGCAGGGTGCCCCAGCCCGGGAGCCTGTCA
TCAGCAGTGAAGAACACAAGCAGCTGATGCTGTTCTACCACAGAAGACAGGAGGAGCTCAAGAAACTGGA
AGAGAATGACGATGACTCCTGTCTGAACTCCCCGTGGGCTGACAACACGGCTTTGAAAAGACATTTTCAT
GGCGTAAAAGACATAAAGTGGCGGCCCAGGTGA

Translation (290 aa):
MVVLHVKRGDESQFLLQAPGSTELEELTAQVARVYNGRLKVHRLCSEMEELAEHGVFLPPNMQGLTDEQI
EELKLKDEWGEKCVPSGGSVFTKDEIGRRNGQAPNEKMKQVLKKTVEEAKAIVSKKQVEAGVFVTMEMVK
DALDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAALEVIQESEAQLWWAAKELRRTKKLSDYVGK
NEKTKIIVKIQQRGQGAPAREPVISSEEHKQLMLFYHRRQEELKKLEENDDDSCLNSPWADNTALKRHFH
GVKDIKWRPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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