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Report for CCDS25158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25158.1 Public Mus musculus 11 Slfn4 23 108 98 CCDS HistoryNCBI Gene:20558Re-query CCDS DB by CCDS ID:25158.1Re-query CCDS DB by GeneID:20558See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000208.12 ENSMUSP00000000208.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000208.12Link to Ensembl Protein Viewer:ENSMUSP00000000208.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000208Re-query CCDS DB by Protein ID:ENSMUSP00000000208
Original member Current member EBI ENSMUST00000167596.1 ENSMUSP00000132595.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167596.1Link to Ensembl Protein Viewer:ENSMUSP00000132595.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167596Re-query CCDS DB by Protein ID:ENSMUSP00000132595
Original member Current member NCBI NM_001302559.1 NP_001289488.1 Accepted alive Link to Nucleotide Sequence:NM_001302559.1Link to Protein Sequence:NP_001289488.1Re-query CCDS DB by Nucleotide ID:NM_001302559Re-query CCDS DB by Protein ID:NP_001289488Link to BLAST:NP_001289488.1
Original member Current member NCBI NM_011410.3 NP_035540.2 Accepted alive Link to Nucleotide Sequence:NM_011410.3Link to Protein Sequence:NP_035540.2Re-query CCDS DB by Nucleotide ID:NM_011410Re-query CCDS DB by Protein ID:NP_035540Link to BLAST:NP_035540.2

Chromosomal Locations for CCDS 25158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83185310 83185446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83186525 83187564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83188663 83189294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCTGGAAACACCCCACAGCTGGAGAAAGATGTGAATCCACAGACATCCATAGAGCCCTCTGTTCAAG
TCAAGTGTCCAGGGGATATTCTTCAGGGAGGACGGCATGCCAAGCGAGGAAGATGGATGGCGTCGTGGAA
AGGATTTCATCTGGGAAGGAGAGACAGTGACTGCAAAATGAACATCACTGTCGATCAGGACACGGACTAC
GCTGAACTGGTTCTGTCTGTAGGAGAAATCACACTCGGAGAGAAGACTAGGGATTCAATGAAAGATAGCC
AACTGAGAAGAAAAGAAGCCAAAAGTATATTACAGGCTGTGTGCACCCTGCTGAATTCTGGAGGGGGTGT
GGTCAAGGCTCACATTAAAAATCAAAACTACAGCTTCACCAGAGATGGAATGGGACTGGATTTGGTAAAT
CCCTTGCCTGGTATCCTGCACCTTCCTCATGACTATCTAGACTTCATGCAGTACAACGACTACTTTTTCG
TTTTTGTGAAACCATGGAAGCCGAATCAGAGAGGTCCGGGGATCGCCACCTGGAAAACCAACTTGTACAA
GAGAATCTTCTCATTCTCAGTTGAACTGAAAGCAGCGGATGCAGTGCAGTTCCTCAAATCCAGACCAAGT
TCCCATGGAAAAACAGTCTGTAATGAAACACTAAATGAATGTCTTTCCTTATTTAACAGAGACTGGCTTG
CCTATGAGGAGACATTCTGTTTCACTAAATCCACACATGCTGAAGTAAAATTGACTCCTAAGGAAAAGAT
TTCTCCTAAGGAAAAGATTTTAGAGCTCCTCCCTCAAACTGTTTCTGCATTTGCAAACACTGATGGGGGA
TATTTGTTCATTGGCTTGGATGGCAAAACGCAGCAAATTATTGGTTTTGAAGCAGAGAAGAGCGATCTCG
TGCTTCTAGAGAGTGAAATAGAAAAGTGCATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGA
GAAGATCAAGTACACGTGCAAATTCATCGAAGTGCACAAATCCGGAGCTGTGTGTGCATATGTGTGCGCG
ATCAGAGTGGAGAAGTTCTGCTGTGCAGTGTTCGCTGCAGAGCCTGAGTCCTGGCACGTGGAAGGCAGCT
GTGTGAAGAGGTTTACCACAGAGGAATGGGTGAAGCGCCAGATGGATGCCACTGCAGTGATGCCTGGAAA
GGTGATATGCTCTCCAGAAGCCCTCTGCATGAAACCATTCTCACAACATGAAGGCTATGAGCAGTTAGTC
CGGACAGAATTGGGCTCCCTGCGTAAAGGAACACTGGTTGTCTCCAAGAGCTGGGCTTTGGATCTGGGCT
TGCAAGAGAAGCAGGAAGTTATCTGGGATGTGCTTCATATTTCCCAGGGCAGTCTCCTGACCCTGCATGT
CTTTGTCCAGGGAGATGAGAACCTGGAAGGCAACAGCAGTCTTCTTGGGAAACTAGGCGCCGAGTTAAAG
GGCTATTATAAACAAATTGCCCTAACATTAAAGCAGACGTTGGTAAACCATTGTGGTTACACTGCGAAAA
TAGGTATTATAGTAAAGATAACATACTTGGGTCATAAGACAATGTGTCTTTATGACTCAAGCGCGAAAAT
ATGTTACCCCCAAATATATTATCTGACTACCAAGGCAGTAAAGGACTTAGAAAAAGCTCTCGCTGAAATC
TTAGGAAGTTATGAGTCTTTCTACAGTTTACCCAGGAGAAACTGGGATTCTTTTATGTCTGCGTTTTTAA
ATGTGGGCAGTTATATAGTTTACTTTTCGAGAAATGTCTTAACTCATATTCGAATCTGA

Translation (602 aa):
MAGNTPQLEKDVNPQTSIEPSVQVKCPGDILQGGRHAKRGRWMASWKGFHLGRRDSDCKMNITVDQDTDY
AELVLSVGEITLGEKTRDSMKDSQLRRKEAKSILQAVCTLLNSGGGVVKAHIKNQNYSFTRDGMGLDLVN
PLPGILHLPHDYLDFMQYNDYFFVFVKPWKPNQRGPGIATWKTNLYKRIFSFSVELKAADAVQFLKSRPS
SHGKTVCNETLNECLSLFNRDWLAYEETFCFTKSTHAEVKLTPKEKISPKEKILELLPQTVSAFANTDGG
YLFIGLDGKTQQIIGFEAEKSDLVLLESEIEKCIQQLPVTHFCEEKEKIKYTCKFIEVHKSGAVCAYVCA
IRVEKFCCAVFAAEPESWHVEGSCVKRFTTEEWVKRQMDATAVMPGKVICSPEALCMKPFSQHEGYEQLV
RTELGSLRKGTLVVSKSWALDLGLQEKQEVIWDVLHISQGSLLTLHVFVQGDENLEGNSSLLGKLGAELK
GYYKQIALTLKQTLVNHCGYTAKIGIIVKITYLGHKTMCLYDSSAKICYPQIYYLTTKAVKDLEKALAEI
LGSYESFYSLPRRNWDSFMSAFLNVGSYIVYFSRNVLTHIRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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