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Report for CCDS25579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25579.1 Public Mus musculus 11 Amz2 23 108 98 CCDS HistoryNCBI Gene:13929Re-query CCDS DB by CCDS ID:25579.1Re-query CCDS DB by GeneID:13929See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092500.10 ENSMUSP00000090157.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092500.10Link to Ensembl Protein Viewer:ENSMUSP00000090157.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092500Re-query CCDS DB by Protein ID:ENSMUSP00000090157
Original member Current member EBI ENSMUST00000238825.1 ENSMUSP00000159063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238825.1Link to Ensembl Protein Viewer:ENSMUSP00000159063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238825Re-query CCDS DB by Protein ID:ENSMUSP00000159063
Original member Current member NCBI NM_001252193.1 NP_001239122.1 Accepted alive Link to Nucleotide Sequence:NM_001252193.1Link to Protein Sequence:NP_001239122.1Re-query CCDS DB by Nucleotide ID:NM_001252193Re-query CCDS DB by Protein ID:NP_001239122Link to BLAST:NP_001239122.1
Original member Current member NCBI NM_025275.4 NP_079551.3 Accepted alive Link to Nucleotide Sequence:NM_025275.4Link to Protein Sequence:NP_079551.3Re-query CCDS DB by Nucleotide ID:NM_025275Re-query CCDS DB by Protein ID:NP_079551Link to BLAST:NP_079551.3

Chromosomal Locations for CCDS 25579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109427086 109427097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109428802 109429084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109429664 109429837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109429924 109430052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109433890 109434053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109434580 109434756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109436563 109436715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGCTGACAAGATGCAGGTACTACGGCACTCCGAGCACACACTGAAAACAGCTCTCCTCTCAAAGAACC
CAGTGCTTGTGTCACAGTATGAGAAGTTAGATGCTGGGGAGCAACGGTTAATGAATGAAGCCTTCCAGCC
ACGCAGTAACCTGTTTGAGCCCATTACTGTGCACTCCCAGTCAGACTGGATCTCCTCCCACCCCGAGGCT
CCCCAAGACTTTGAGCAGTTTTTCTCTGACCGCTACAGAAAGGCACCCTGTCCAAAGAAACATATAATCT
ACATTCAGTCCATTGGCTCTCTAGGCAACACCAGAGTCATCAGTGAAGAGTATATTAAATGGCTCAAGGG
CTACTGTGAAGCATTTTTCTACGGTTTGAAGGTGAAGTTCTTAGAACCTGTTTCGGTCTCTGAAACCAAG
TGTTCCTTTAGAGTGAATGAGCACACACAAAACCTGCAAATCCACACAGGACATATCCTGGCATTCTTGA
AGAAGAATAAACCGGAAGATGCCTTCTGCATCGTGGGGATCACAATGATCGATCTCTACCCTCGGGACTC
GTGGAACTTCGTCTTTGGACAGGCCTCCTTGTCAAGTGGTGTGGGCATATTCAGCTTTGCCAGGTATGGC
AAGGACTTCTACACCTCGAAATACGAAGGCAATGTGACGTCTCTGCAGCTAACGTCTCCCACTGACTACT
CCATTTTTGATAACTATTACATCCCTGAAATCACTAGTGTTTTGCTGTTGCGATCCTGTAAGACTTTAAC
CCATGAGATCGGACACATACTTGGACTGCGACACTGCCAGTGGCTTGCGTGTTTAATGCAAGGCTCCAAT
CACTTGGAGGAATCTGACCGGCGTCCTCTGAATGTTTGCCCTATCTGCTTACGAAAGCTGCAGAGTGCCA
TTGGCTTCAATATTGTGGAGAGATACAGAGCACTGGTGAAGTGGATTGACGACGAATCTTGCAACGAATC
AGGAGCAACTCCGAAAAGTAGTTCTGAGCATGCGCATTTGCCGAAACCTGTGGAAGCCTTTAAGGATTGG
AGAGAGTGGCTAATGAGATGCATTGCTCTCCTTGAGAAATAA

Translation (363 aa):
MADKMQVLRHSEHTLKTALLSKNPVLVSQYEKLDAGEQRLMNEAFQPRSNLFEPITVHSQSDWISSHPEA
PQDFEQFFSDRYRKAPCPKKHIIYIQSIGSLGNTRVISEEYIKWLKGYCEAFFYGLKVKFLEPVSVSETK
CSFRVNEHTQNLQIHTGHILAFLKKNKPEDAFCIVGITMIDLYPRDSWNFVFGQASLSSGVGIFSFARYG
KDFYTSKYEGNVTSLQLTSPTDYSIFDNYYIPEITSVLLLRSCKTLTHEIGHILGLRHCQWLACLMQGSN
HLEESDRRPLNVCPICLRKLQSAIGFNIVERYRALVKWIDDESCNESGATPKSSSEHAHLPKPVEAFKDW
REWLMRCIALLEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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