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Report for CCDS37834.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37834.1 |
Public |
Mus musculus |
18 |
Ndst1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:15531](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37834.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:15531](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37834.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000169273.1 |
ENSMUSP00000126623.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000169273.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000126623.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000169273](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000126623](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000237783.1 |
ENSMUSP00000158312.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000237783.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000158312.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000237783](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000158312](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001348100.1 |
NP_001335029.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001348100.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001335029.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001348100](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001335029](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001335029.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001348101.1 |
NP_001335030.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001348101.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001335030.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001348101](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001335030](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001335030.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001348102.1 |
NP_001335031.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001348102.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001335031.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001348102](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001335031](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001335031.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001348103.1 |
NP_001335032.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001348103.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001335032.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001348103](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001335032](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001335032.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008306.5 |
NP_032332.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008306.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032332.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008306](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032332](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032332.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 37834.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2649 nt): ATGCCTGCCCTGGCGTGCCTCCGGAGGCTGTGTCGGCACCTGTCCCCACAGGCTGTCCTGTTCCTGCTGT TCGTCTTCTGCCTGTTCAGCGTTTTTGTCTCTGCCTACTACCTATATGGTTGGAACCGGGGCCTTGAGCC CTCGGCAGATGCTTCCGAGTCTGACTGTGGGGACCCGCCACCTGTCGCCCCTAGCCGCCTCCTGCCAATC AAGCCCGTGCAGGCGGTTGCCCCTTCCCGAACAGACCCACTGGTGCTGGTATTTGTGGAGAGCCTTTATT CACAGCTGGGCCAGGAGGTGGTGGCAATCCTGGAATCCAGTCGCTTCAAATACCGGACAGAGATTGCACC GGGCAAGGGGGACATGCCCACACTCACAGACAAGGGCCGTGGCCGCTTCGCCCTCATCATCTACGAGAAC ATCCTCAAGTATGTCAACCTGGATGCCTGGAACCGGGAGCTGCTGGACAAGTACTGTGTGGCCTACGGCG TGGGCATCATTGGATTCTTCAAGGCCAATGAGAACAGCCTGCTGAGTGCACAGCTCAAAGGCTTCCCTCT CTTCCTGCATTCGAACCTGGGCTTGAAAGACTGCAGCATCAACCCCAAGTCACCACTGCTCTATGTGACA CGGCCCAGTGAGGTAGAGAAAGGCGTGCTGCCCGGAGAGGATTGGACTGTGTTCCAGTCCAACCATTCTA CCTACGAACCAGTGCTGTTGGCCAAGACACGCTCCTCCGAATCCATCCCACACCTGGGTGCTGATGCTGG CCTGCATGCTGCGCTGCACGCTACTGTGGTCCAGGACCTGGGTCTCCACGATGGCATCCAGCGTGTGCTC TTTGGCAACAACCTCAACTTTTGGCTGCATAAGCTTGTCTTCGTGGATGCTGTGGCCTTCCTCACGGGGA AGCGCCTCTCACTGCCTTTGGACCGATACATCCTGGTGGATATTGATGACATTTTTGTGGGCAAGGAGGG CACACGCATGAAGGTGGAGGATGTGAAGGCCCTGTTTGATACACAGAATGAACTCCGCACACATATTCCA AACTTCACCTTCAACCTGGGCTACTCAGGGAAATTCTTCCACACAGGTACGGATGCTGAGGATGCTGGCG ACGATCTGCTGTTGTCCTATGTGAAAGAGTTCTGGTGGTTCCCCCACATGTGGAGCCATATGCAACCCCA CCTCTTCCACAACCAATCTGTGCTGGCAGAGCAGATGGCCCTGAACAAGAAGTTCGCTGTCGAGCACGGC ATCCCCACAGATATGGGCTATGCGGTGGCGCCCCACCACTCCGGTGTGTACCCTGTGCACGTGCAGCTGT ATGAGGCCTGGAAGCAAGTGTGGGGCATCCGTGTGACCAGCACAGAGGAGTACCCACATCTGAAGCCGGC CCGGTACCGCCGTGGCTTTATCCACAATGGCATCATGGTCCTCCCTCGGCAGACCTGTGGCCTCTTTACA CACACCATCTTCTACAACGAGTACCCTGGAGGCTCCAGTGAGCTGGACAAGATCATCAATGGGGGCGAGC TCTTCCTCACTGTGCTCCTCAATCCTATCAGCATCTTCATGACACACTTATCCAACTATGGAAATGACCG CCTGGGACTATACACCTTCAAGCACCTGGTGCGCTTCCTGCACTCCTGGACCAACCTGAGGCTGCAGACT CTGCCCCCCGTGCAGCTGGCCCAGAAGTACTTTCAGATCTTTTCTGAGGAGAAGGACCCGCTTTGGCAGG ATCCCTGTGAGGACAAACGCCACAAGGACATCTGGTCTAAGGAGAAGACATGTGACCGCTTCCCAAAGCT TCTTATCATTGGCCCCCAGAAAACAGGCACCACGGCCCTCTACCTGTTCCTGGGCATGCACCCGGACCTC AGCAGCAACTACCCCAGCTCCGAGACCTTCGAGGAGATCCAGTTTTTTAACGGCCACAACTATCACAAAG GCATCGACTGGTACATGGAGTTCTTCCCTATTCCCTCCAACACCACCTCGGACTTCTACTTTGAGAAAAG TGCCAACTACTTTGATTCAGAAGTGGCACCACGGCGGGCAGCTGCACTGTTGCCCAAGGCCAAGATCCTC AGCATCCTCATCAACCCAGCCGACCGGGCTTATTCCTGGTACCAGCACCAGCGAGCCCATGATGACCCAG TGGCCCTAAAGTACACCTTTCATGAGGTGATCACAGCTGGCCCTGATGCATCCTCAAAGCTGCGTGCCCT CCAGAACCGGTGCCTGGTCCCAGGCTGGTATGCCACTCATATTGAACGCTGGCTCAGCGCCTTTCATGCC AACCAGATCCTGGTCTTGGATGGCAAACTGCTGCGAACAGAACCTGCCAAAGTCATGGACACAGTGCAGA AATTCCTTGGGGTGACCAGCACTGTCGACTACCATAAAACCTTGGCGTTTGATCCAAAGAAGGGATTTTG GTGCCAACTGCTTGAAGGAGGAAAAACCAAGTGTCTGGGAAAAAGCAAGGGACGGAAATATCCAGAGATG GACTTGGATTCCCGAGCCTTCCTAAAGGATTACTTCCGGGACCACAACATTGAGCTCTCTAAGCTGCTGT ATAAGATGGGCCAGACACTGCCCACCTGGCTGCGGGAAGACCTCCAGAACACCAGGTAG
Translation (882 aa): MPALACLRRLCRHLSPQAVLFLLFVFCLFSVFVSAYYLYGWNRGLEPSADASESDCGDPPPVAPSRLLPI KPVQAVAPSRTDPLVLVFVESLYSQLGQEVVAILESSRFKYRTEIAPGKGDMPTLTDKGRGRFALIIYEN ILKYVNLDAWNRELLDKYCVAYGVGIIGFFKANENSLLSAQLKGFPLFLHSNLGLKDCSINPKSPLLYVT RPSEVEKGVLPGEDWTVFQSNHSTYEPVLLAKTRSSESIPHLGADAGLHAALHATVVQDLGLHDGIQRVL FGNNLNFWLHKLVFVDAVAFLTGKRLSLPLDRYILVDIDDIFVGKEGTRMKVEDVKALFDTQNELRTHIP NFTFNLGYSGKFFHTGTDAEDAGDDLLLSYVKEFWWFPHMWSHMQPHLFHNQSVLAEQMALNKKFAVEHG IPTDMGYAVAPHHSGVYPVHVQLYEAWKQVWGIRVTSTEEYPHLKPARYRRGFIHNGIMVLPRQTCGLFT HTIFYNEYPGGSSELDKIINGGELFLTVLLNPISIFMTHLSNYGNDRLGLYTFKHLVRFLHSWTNLRLQT LPPVQLAQKYFQIFSEEKDPLWQDPCEDKRHKDIWSKEKTCDRFPKLLIIGPQKTGTTALYLFLGMHPDL SSNYPSSETFEEIQFFNGHNYHKGIDWYMEFFPIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKIL SILINPADRAYSWYQHQRAHDDPVALKYTFHEVITAGPDASSKLRALQNRCLVPGWYATHIERWLSAFHA NQILVLDGKLLRTEPAKVMDTVQKFLGVTSTVDYHKTLAFDPKKGFWCQLLEGGKTKCLGKSKGRKYPEM DLDSRAFLKDYFRDHNIELSKLLYKMGQTLPTWLREDLQNTR
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