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Report for CCDS84261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84261.1 Public Mus musculus 16 Eva1c 23 108 98 CCDS HistoryNCBI Gene:70967Re-query CCDS DB by CCDS ID:84261.1Re-query CCDS DB by GeneID:70967See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 84261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231964.1 ENSMUSP00000155994.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231964.1Link to Ensembl Protein Viewer:ENSMUSP00000155994.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231964Re-query CCDS DB by Protein ID:ENSMUSP00000155994
Original member Current member NCBI NM_001316760.1 NP_001303689.1 Accepted alive Link to Nucleotide Sequence:NM_001316760.1Link to Protein Sequence:NP_001303689.1Re-query CCDS DB by Nucleotide ID:NM_001316760Re-query CCDS DB by Protein ID:NP_001303689Link to BLAST:NP_001303689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303689.1 345 P58659-3 345 100% 0 0

Chromosomal Locations for CCDS 84261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90866380 90866451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90869566 90869689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90876039 90876191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90890530 90890673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90894578 90894655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90897364 90897453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90904104 90904480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTGTAGTTCCCAGGAGCCCATCTCCCAGAGGGAAGACAACCTGACCTGTGTGGCATCCACCACTTTGC
AGAAGGTGCTGGACGAGTGCCAGAACCAGCGGGCCTGCCACCTCCTGGTCAATAGCCGAGTCTTCGGACC
TGACCTTTGTCCAGGAAGCAGTAAATACCTCCTGGTCTCCTTTAAATGCCAACCTAATGAGTTGAAAAAC
AAGACAGTGTGTGAAAACCAGGAGTTGAAGCTACACTGCCATGAGTCCAAGTTCCTCAACATCTACTCCG
CCGCCTACGGCCGGAGGACCCAGCAAAGAGACATCTGCTCCTCCGGGGCGGAGCTGCTGCCCCCCTTCGA
CTGCCTGTCTTACACGGCTTTACAAGTCCTGTCCAGGAGGTGCTATGGGAAGCAGAGATGTAAGGTCCTC
GTCGATAATTACCACTTCGGAAGCCCCTGTCTTCCAGGAGTGAAAAAATACCTCACTGTTGCCTACGCAT
GTGTTCCCAAGAACATACTCACGGCAGTGGATCCGGCTGTTGCTAATCTAAATCCTTCTCTGAAGAAAGA
TGATGAACACGGTATAACATTCAACCCAAGCGGGTCGAGGGTTGTGCGGAAAGATGGCGTTATCGTCAGC
AACTCTCTGGCCGCGTTCGCTTACATTCGAGCCCACCCAGAGAGAGCCGCTCTGCTGTTCATGTCCAGTG
TCTGCATCGGCCTGCTCCTCACACTGTGTGCCCTGGTCATCAGGGTGTCCTGTACGAAGGACTTCCGGGA
GCTGAGGCAGGGGAGGGAGCACCTGGTGCTAGGGAGCGACAAGGCGGAGGAGGACAGCGAGGAAGACTTG
GAAGAGGAGGACTCCTCGGATTCGCAGTTTCCCGAGGAGTTGTCCAGGTTTTGTAGGACTTCATATCCAG
CCTATAGCTCTATAGAAGCCGCCGAGCTGGCGGAAAGGATTGAACGCAGGGAGCAAGTCATTCAAGAGAT
ATGGATGAACAGTGGCCTGGATTCCTCACTCCCCAGGAACGTCGGCCACTTCTACTGA

Translation (345 aa):
MCSSQEPISQREDNLTCVASTTLQKVLDECQNQRACHLLVNSRVFGPDLCPGSSKYLLVSFKCQPNELKN
KTVCENQELKLHCHESKFLNIYSAAYGRRTQQRDICSSGAELLPPFDCLSYTALQVLSRRCYGKQRCKVL
VDNYHFGSPCLPGVKKYLTVAYACVPKNILTAVDPAVANLNPSLKKDDEHGITFNPSGSRVVRKDGVIVS
NSLAAFAYIRAHPERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRELRQGREHLVLGSDKAEEDSEEDL
EEEDSSDSQFPEELSRFCRTSYPAYSSIEAAELAERIERREQVIQEIWMNSGLDSSLPRNVGHFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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