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Report for CCDS25823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25823.1 Public Mus musculus 12 Lpin1 23 108 98 CCDS HistoryNCBI Gene:14245Re-query CCDS DB by CCDS ID:25823.1Re-query CCDS DB by GeneID:14245See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222989.1 ENSMUSP00000152276.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222989.1Link to Ensembl Protein Viewer:ENSMUSP00000152276.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222989Re-query CCDS DB by Protein ID:ENSMUSP00000152276
Original member Current member EBI ENSMUST00000221230.1 ENSMUSP00000152466.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221230.1Link to Ensembl Protein Viewer:ENSMUSP00000152466.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221230Re-query CCDS DB by Protein ID:ENSMUSP00000152466
Original member Current member NCBI NM_001130412.1 NP_001123884.1 Accepted alive Link to Nucleotide Sequence:NM_001130412.1Link to Protein Sequence:NP_001123884.1Re-query CCDS DB by Nucleotide ID:NM_001130412Re-query CCDS DB by Protein ID:NP_001123884Link to BLAST:NP_001123884.1
Original member Current member NCBI NM_172950.3 NP_766538.2 Accepted alive Link to Nucleotide Sequence:NM_172950.3Link to Protein Sequence:NP_766538.2Re-query CCDS DB by Nucleotide ID:NM_172950Re-query CCDS DB by Protein ID:NP_766538Link to BLAST:NP_766538.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123884.1 891 Q91ZP3-2 891 99.7755% 0 2
NP_766538.2 891 Q91ZP3-2 891 99.7755% 0 2

Chromosomal Locations for CCDS 25823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16538413 16538572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16540914 16541017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16541714 16541828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16544644 16544796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16546721 16546807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16547486 16547634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16548877 16549003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16553949 16554028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16558409 16558501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16560982 16561051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16562363 16562456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16563622 16563812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16564526 16564619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16565391 16565697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16568390 16568519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16573660 16573785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16576948 16577255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16579882 16579977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16580704 16580895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGAATTACGTGGGGCAGCTGGCCGGCCAGGTGTTTGTGACGGTGAAGGAGCTCTACAAGGGACTGAACC
CCGCCACGCTGTCGGGATGCATCGACATCATTGTCATCCGGCAGCCCAATGGCAGTCTGCAGTGCTCCCC
TTTCCACGTCCGCTTCGGCAAGATGGGTGTCCTCCGCTCCCGAGAGAAAGTGGTGGACATAGAAATCAAT
GGGGAGTCCGTGGATTTGCACATGAAGTTGGGAGACAACGGAGAAGCATTTTTTGTTCAAGAGACTGACA
ACGATCAGGAAATCATCCCCATGTACCTGGCCACGTCCCCCATCCTGTCAGAAGGAGCTGCGAGAATGGA
AAGCCAGCTGAAGAGGAACTCTGTAGACAGAATCAGGTGCCTGGATCCCACTACAGCTGCCCAGGGCCTG
CCTCCCAGCGACACCCCATCCACTGGTTCTCTGGGGAAGAAGAGAAGGAAAAGGAGGAGGAAGGCCCAGT
TGGACAATCTCAAAAGAGATGACAATGTCAACACATCTGAGGATGAGGACATGTTTCCCATAGAGATGAG
CTCGGATGAGGACACAGCACCGATGGATGGAAGCAGAACTCTTCCTAATGATGTACCACCATTCCAAGAT
GATATTCCTAAGGAAAACTTCCCCTCGATTTCAACGTACCCCCAGTCAGCATCGTATCCCAGTTCGGACA
GAGAATGGTCCCCCAGCCCCAGTCCTTCAGGCTCCCGGCCCTCAACACCAAAAAGTGACTCTGAGCTGGT
CAGTAAGTCTGCAGACAGGTTGACGCCAAAGAATAACCTGGAAATGCTCTGGCTGTGGGGTGAATTGCCA
CAGGCTGCAAAGTCCTCTTCTCCACACAAGATGAAAGAGTCCAGCCCCTTAGGGAGCCGGAAGACTCCTG
ATAAAATGAATTTTCAGGCCATTCACAGCGAGTCTTCAGATACTTTTAGTGACCAGTCGCCAACAATGGC
CCGGGGACTGCTCATCCACCAGAGTAAGGCCCAGACGGAAATGCAGTTTGTGAACGAGGAGGATCTCGAG
TCCTTGGGGGCGGCAGCCCCACCTTCACCCGTGGCCGAAGAGCTCAAGGCCCCATATCCCAACACCGCAC
AGTCGTCGAGCAAGACAGATTCCCCTTCCAGGAAGAAAGATAAACGGAGCCGACACCTTGGAGCTGATGG
TGTTTATCTGGACGACCTCACGGACATGGACCCTGAAGTGGCAGCCCTGTATTTCCCCAAGAATGGGGAT
CCTGGTGGGCTCCCCAAACAAGCCAGTGACAACGGAGCCAGGTCAGCCAACCAGTCACCACAGTCTGTGG
GAGGCTCGGGCATCGACAGTGGTGTGGAGAGCACCTCCGACAGCCTGAGGGACCTGCCATCCATCGCCAT
CTCCCTCTGCGGTGGCCTCAGTGACCACAGAGAGATCACCAAAGATGCATTTTTGGAACAAGCCGTGTCA
TATCAGCAATTTGCCGACAACCCTGCTATCATCGATGACCCCAACCTCGTGGTCAAGGTTGGCAATAAGT
ATTACAACTGGACAACAGCAGCTCCTCTACTTCTGGCGATGCAGGCTTTCCAGAAACCTTTGCCAAAGGC
CACTGTGGAATCCATCATGAGAGATAAGATGCCCAAAAAGGGAGGAAGATGGTGGTTTTCCTGGAGAGGA
AGAAATGCCACAATCAAAGAGGAAAGCAAGCCTGAACAGTGCCTGACTGGGAAAGGCCACAATACCGGAG
AGCAGCCTGCCCAGCTTGGCCTGGCCACCAGGATAAAGCATGAGTCATCCTCCAGTGATGAAGAGCACGC
AGCCGCCAAGCCATCAGGTTCGAGCCACCTCTCTCTCTTGTCCAACGTCAGCTACAAAAAGACCCTGCGG
CTCACGTCGGAGCAGCTGAAAAGCTTGAAGTTGAAGAACGGCCCCAATGATGTGGTGTTCAGTGTCACTA
CCCAGTACCAGGGCACCTGTCGCTGCGAGGGCACCATCTACCTGTGGAATTGGGACGACAAAGTCATCAT
CTCAGATATCGATGGGACCATCACAAGATCTGATACTCTTGGTCACATTTTGCCCACGCTGGGAAAGGAT
TGGACTCACCAGGGCATTGCAAAGCTGTACCACAAAGTAAGCCAGAATGGCTACAAGTTTCTCTATTGTT
CGGCACGTGCCATTGGGATGGCGGACATGACGAGGGGCTACCTGCACTGGGTCAACGAGAGGGGCACGGT
GCTTCCACAGGGCCCGCTTCTGCTCAGCCCGAGCAGCCTCTTCTCCGCCTTGCACAGAGAAGTGATTGAA
AAGAAGCCAGAAAAGTTCAAAGTCCAGTGTTTGACAGACATCAAGAACCTGTTTTTCCCAAACACAGAAC
CCTTCTATGCTGCTTTTGGGAACCGGCCTGCTGATGTGTATTCCTACAAGCAAGTGGGAGTGTCCCTGAA
TAGGATCTTCACTGTGAACCCCAAGGGTGAGCTGGTGCAGGAGCATGCCAAGACCAACATCAGCTCGTAC
GTGCGGCTCTGCGAAGTGGTCGATCACGTCTTCCCATTGCTAAAGAGAAGCCATTCCTGTGACTTCCCCT
GTTCAGACACTTTCAGTAACTTCACCTTTTGGAGAGAGCCACTGCCACCTTTTGAAAACCAGGACATGCA
TTCAGCCTCAGCTTGA

Translation (891 aa):
MNYVGQLAGQVFVTVKELYKGLNPATLSGCIDIIVIRQPNGSLQCSPFHVRFGKMGVLRSREKVVDIEIN
GESVDLHMKLGDNGEAFFVQETDNDQEIIPMYLATSPILSEGAARMESQLKRNSVDRIRCLDPTTAAQGL
PPSDTPSTGSLGKKRRKRRRKAQLDNLKRDDNVNTSEDEDMFPIEMSSDEDTAPMDGSRTLPNDVPPFQD
DIPKENFPSISTYPQSASYPSSDREWSPSPSPSGSRPSTPKSDSELVSKSADRLTPKNNLEMLWLWGELP
QAAKSSSPHKMKESSPLGSRKTPDKMNFQAIHSESSDTFSDQSPTMARGLLIHQSKAQTEMQFVNEEDLE
SLGAAAPPSPVAEELKAPYPNTAQSSSKTDSPSRKKDKRSRHLGADGVYLDDLTDMDPEVAALYFPKNGD
PGGLPKQASDNGARSANQSPQSVGGSGIDSGVESTSDSLRDLPSIAISLCGGLSDHREITKDAFLEQAVS
YQQFADNPAIIDDPNLVVKVGNKYYNWTTAAPLLLAMQAFQKPLPKATVESIMRDKMPKKGGRWWFSWRG
RNATIKEESKPEQCLTGKGHNTGEQPAQLGLATRIKHESSSSDEEHAAAKPSGSSHLSLLSNVSYKKTLR
LTSEQLKSLKLKNGPNDVVFSVTTQYQGTCRCEGTIYLWNWDDKVIISDIDGTITRSDTLGHILPTLGKD
WTHQGIAKLYHKVSQNGYKFLYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSLFSALHREVIE
KKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGVSLNRIFTVNPKGELVQEHAKTNISSY
VRLCEVVDHVFPLLKRSHSCDFPCSDTFSNFTFWREPLPPFENQDMHSASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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