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Report for CCDS48554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48554.1 Public Mus musculus 10 Grik2 23 108 98 CCDS HistoryNCBI Gene:14806Re-query CCDS DB by CCDS ID:48554.1Re-query CCDS DB by GeneID:14806See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105484.9 ENSMUSP00000101124.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105484.9Link to Ensembl Protein Viewer:ENSMUSP00000101124.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105484Re-query CCDS DB by Protein ID:ENSMUSP00000101124
Original member Current member EBI ENSMUST00000218823.1 ENSMUSP00000151921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218823.1Link to Ensembl Protein Viewer:ENSMUSP00000151921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218823Re-query CCDS DB by Protein ID:ENSMUSP00000151921
Original member NCBI NM_001111268.2 NP_001104738.1 Updated not alive Link to Nucleotide Sequence:NM_001111268.2Link to Protein Sequence:NP_001104738.1Re-query CCDS DB by Nucleotide ID:NM_001111268Re-query CCDS DB by Protein ID:NP_001104738
Current member NCBI NM_001111268.3 NP_001104738.2 Accepted alive Link to Nucleotide Sequence:NM_001111268.3Link to Protein Sequence:NP_001104738.2Re-query CCDS DB by Nucleotide ID:NM_001111268Re-query CCDS DB by Protein ID:NP_001104738Link to BLAST:NP_001104738.2
Original member NCBI NM_001358866.1 NP_001345795.1 Updated not alive Link to Nucleotide Sequence:NM_001358866.1Link to Protein Sequence:NP_001345795.1Re-query CCDS DB by Nucleotide ID:NM_001358866Re-query CCDS DB by Protein ID:NP_001345795
Current member NCBI NM_001358866.2 NP_001345795.2 Accepted alive Link to Nucleotide Sequence:NM_001358866.2Link to Protein Sequence:NP_001345795.2Re-query CCDS DB by Nucleotide ID:NM_001358866Re-query CCDS DB by Protein ID:NP_001345795Link to BLAST:NP_001345795.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104738.2 908 P39087-1 908 100% 0 0
NP_001345795.2 908 P39087-1 908 100% 0 0

Chromosomal Locations for CCDS 48554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 49101108 49101272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49113370 49113620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49132679 49132904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49240579 49240796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49244325 49244443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49272740 49272963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49355909 49356115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49404337 49404450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49419668 49419775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49422529 49422672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49523682 49523855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49527987 49528040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49535318 49535499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49573564 49573821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49578135 49578302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49783145 49783259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGAAGATTATTTCCCCAGTTTTAAGTAATCTAGTCTTCAGTCGCTCCATTAAAGTCCTGCTCTGCTTGT
TGTGGATCGGATATTCGCAAGGAACCACACATGTGTTAAGATTCGGTGGTATATTTGAATATGTGGAATC
TGGCCCTATGGGAGCTGAAGAACTTGCATTCAGATTTGCTGTGAATACAATCAACAGGAACAGGACTCTG
CTACCCAATACCACGTTAACATATGATACACAGAAGATCAATCTCTATGACAGTTTTGAAGCATCTAAGA
AAGCTTGTGATCAGCTGTCTCTTGGGGTGGCTGCCATCTTCGGTCCTTCACACAGTTCATCAGCAAATGC
TGTTCAGTCCATCTGCAATGCTCTGGGGGTTCCTCACATACAGACCCGCTGGAAGCACCAGGTGTCAGAC
AATAAGGATTCCTTCTATGTCAGTCTCTACCCAGACTTCTCTTCCCTCAGCCGTGCCATCTTGGATTTGG
TGCAGTTTTTTAAGTGGAAAACTGTCACAGTTGTGTATGACGACAGCACTGGTCTCATTCGCTTGCAAGA
GCTCATCAAAGCTCCATCAAGGTACAATCTTCGACTTAAAATTCGTCAGCTGCCAGCTGATACAAAAGAT
GCAAAGCCTTTGCTGAAAGAGATGAAGAGGGGCAAGGAGTTCCACGTGATCTTCGACTGCAGCCATGAAA
TGGCAGCAGGCATTTTAAAGCAGGCATTAGCTATGGGAATGATGACAGAATACTACCACTATATATTTAC
GACTCTGGACCTCTTCGCTCTTGATGTGGAGCCCTACAGATACAGTGGCGTAAATATGACAGGGTTCAGA
ATACTAAATACAGAGAATACCCAAGTCTCCTCCATCATCGAGAAGTGGTCGATGGAACGGTTACAGGCAC
CTCCAAAACCTGACTCAGGTTTGCTGGATGGATTTATGACGACTGATGCTGCTCTGATGTATGATGCAGT
GCACGTTGTGTCTGTAGCTGTCCAACAGTTTCCCCAGATGACAGTCAGCTCCTTGCAATGCAATCGACAC
AAACCCTGGCGCTTTGGGACTCGCTTCATGAGCCTAATTAAAGAGGCTCATTGGGAAGGTCTTACAGGCA
GAATTACATTTAACAAAACCAATGGATTGCGAACAGATTTTGATTTGGATGTGATCAGTCTCAAGGAAGA
AGGTCTGGAGAAGATTGGGACTTGGGATCCATCCAGTGGCCTGAATATGACAGAAAGTCAGAAAGGGAAG
CCAGCAAATATTACAGATTCATTGTCTAATCGTTCTTTGATTGTTACCACCATTTTGGAAGAACCATATG
TCCTGTTTAAGAAGTCTGACAAACCTCTCTATGGGAATGATCGATTTGAAGGCTACTGTATTGATCTTCT
ACGAGAGTTATCTACAATCCTTGGCTTTACATATGAAATTAGGCTTGTGGAGGATGGGAAATATGGAGCC
CAGGATGATGTGAATGGACAATGGAATGGAATGGTTCGTGAGCTAATTGATCATAAAGCTGACCTTGCAG
TTGCTCCACTGGCTATTACCTATGTTCGTGAGAAGGTCATCGACTTTTCAAAGCCGTTTATGACTCTTGG
AATAAGTATTTTGTACCGCAAGCCCAATGGTACAAACCCAGGCGTCTTCTCCTTCCTGAATCCTCTCTCC
CCTGATATCTGGATGTATATTCTGCTGGCTTACTTGGGTGTCAGTTGTGTGCTCTTTGTCATAGCCAGGT
TTAGTCCCTATGAGTGGTATAATCCACACCCTTGCAACCCTGACTCAGACGTGGTGGAAAACAATTTTAC
CTTGCTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAGCAAGGTTCTGAGCTCATGCCCAAAGCA
CTCTCCACCAGGATAGTGGGAGGCATTTGGTGGTTTTTCACACTTATCATCATTTCTTCGTATACCGCTA
ACCTAGCCGCCTTTCTGACCGTGGAACGCATGGAGTCGCCTATTGACTCTGCTGACGATTTAGCTAAGCA
AACCAAGATAGAATATGGAGCAGTAGAGGACGGCGCAACCATGACGTTTTTCAAGAAATCAAAAATCTCA
ACGTATGATAAAATGTGGGCATTTATGAGCAGCAGGAGACAGTCTGTGCTTGTCAAAAGCAATGAGGAAG
GGATTCAACGTGTCCTCACCTCCGATTATGCTTTCTTAATGGAGTCAACGACCATCGAGTTTGTTACCCA
GCGGAACTGTAACCTCACGCAGATTGGTGGCCTTATAGACTCCAAAGGCTATGGTGTTGGCACTCCCATG
GGTTCTCCATATCGAGACAAAATCACCATAGCCATTCTTCAGCTGCAGGAGGAAGGCAAGCTGCACATGA
TGAAGGAGAAGTGGTGGCGAGGCAATGGCTGCCCAGAGGAGGAGAGCAAAGAGGCCAGTGCTCTAGGGGT
GCAGAATATTGGTGGTATCTTCATTGTCCTGGCAGCCGGCTTGGTGCTCTCAGTTTTTGTGGCAGTGGGA
GAGTTTTTATACAAATCCAAAAAAAACGCTCAATTGGAAAAGAGGTCCTTCTGTAGCGCCATGGTGGAAG
AACTGAGAATGTCTCTGAAGTGCCAGCGTCGGCTCAAACATAAGCCACAGGCCCCAGTTATTGTGAAAAC
AGAAGAAGTTATCAACATGCACACATTTAACGACAGAAGGTTGCCAGGTAAAGAAACCATGGCATGA

Translation (908 aa):
MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTL
LPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSD
NKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKD
AKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFR
ILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRH
KPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGK
PANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGA
QDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLS
PDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKA
LSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKIS
TYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPM
GSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVG
EFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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