NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28636.1 Public Mus musculus 17 Pfdn6 23 108 98 CCDS HistoryNCBI Gene:14976Re-query CCDS DB by CCDS ID:28636.1Re-query CCDS DB by GeneID:14976See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025163.13 ENSMUSP00000025163.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025163.13Link to Ensembl Protein Viewer:ENSMUSP00000025163.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025163Re-query CCDS DB by Protein ID:ENSMUSP00000025163
Original member Current member EBI ENSMUST00000174048.7 ENSMUSP00000133656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174048.7Link to Ensembl Protein Viewer:ENSMUSP00000133656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174048Re-query CCDS DB by Protein ID:ENSMUSP00000133656
Original member Current member EBI ENSMUST00000179418.8 ENSMUSP00000137072.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179418.8Link to Ensembl Protein Viewer:ENSMUSP00000137072.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179418Re-query CCDS DB by Protein ID:ENSMUSP00000137072
Original member Current member NCBI NM_001185182.1 NP_001172111.1 Accepted alive Link to Nucleotide Sequence:NM_001185182.1Link to Protein Sequence:NP_001172111.1Re-query CCDS DB by Nucleotide ID:NM_001185182Re-query CCDS DB by Protein ID:NP_001172111Link to BLAST:NP_001172111.1
Original member Current member NCBI NM_010385.2 NP_034515.1 Accepted alive Link to Nucleotide Sequence:NM_010385.2Link to Protein Sequence:NP_034515.1Re-query CCDS DB by Nucleotide ID:NM_010385Re-query CCDS DB by Protein ID:NP_034515Link to BLAST:NP_034515.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172111.1 127 Q03958 127 100% 0 0
NP_034515.1 127 Q03958 127 100% 0 0

Chromosomal Locations for CCDS 28636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33938988 33939111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33939539 33939663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33939748 33939818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33940024 33940087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGGCTGAACTGATCCAAAAGAAGCTGCAGGGAGAGGTAGAGAAATATCAACAGCTGCAGAAGGACTTGA
GTAAATCTATGTCAGGGAGGCAGAAGCTCGAAGCACAGCTAACGGAAAACAATATCGTGAAGGAGGAGCT
GGCCCTGCTGGATGGATCCAACGTGGTCTTTAAGCTTCTGGGACCCGTGCTTGTCAAACAGGAGCTGGGG
GAGGCTCGGGCCACAGTAGGGAAGAGGCTAGACTACATCACAGCAGAAATCAAGCGCTACGAATCACAGC
TTCGGGACCTCGAGCGGCAGTCAGAGCAACAGAGGGAAACCCTTGCTCAACTGCAGCAGGAGTTTCAGCG
GGCCCAAGCTGCAAAGGCTCCTGGGAAAGCCTGA

Translation (127 aa):
MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELG
EARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAPGKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH