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Report for CCDS27654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27654.1 Public Mus musculus 15 Apobec3 23 108 98 CCDS HistoryNCBI Gene:80287Re-query CCDS DB by CCDS ID:27654.1Re-query CCDS DB by GeneID:80287See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165537.7 ENSMUSP00000132391.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165537.7Link to Ensembl Protein Viewer:ENSMUSP00000132391.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165537Re-query CCDS DB by Protein ID:ENSMUSP00000132391
Original member Current member NCBI NM_030255.3 NP_084531.2 Accepted alive Link to Nucleotide Sequence:NM_030255.3Link to Protein Sequence:NP_084531.2Re-query CCDS DB by Nucleotide ID:NM_030255Re-query CCDS DB by Protein ID:NP_084531Link to BLAST:NP_084531.2

Chromosomal Locations for CCDS 27654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79892517 79892569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79895411 79895558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79897695 79897971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79898111 79898225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79905444 79905600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79906341 79906602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79906851 79906963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79907304 79907369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGGACCATTCTGTCTGGGATGCAGCCATCGCAAATGCTATTCACCGATCAGAAACCTGATATCTCAAG
AAACATTCAAGTTCCACTTTAAGAACCTAGGCTATGCCAAAGGCCGGAAAGATACCTTCTTGTGCTATGA
AGTGACTAGAAAGGACTGCGATTCACCCGTCTCCCTTCACCATGGGGTCTTTAAGAACAAGGACAACATC
CACGCTGAAATCTGCTTTTTATACTGGTTCCATGACAAAGTACTGAAAGTGCTGTCTCCGAGAGAAGAGT
TCAAGATCACCTGGTATATGTCCTGGAGCCCCTGTTTCGAATGTGCAGAGCAGATAGTAAGGTTCCTGGC
TACACACCACAACCTGAGCCTGGACATCTTCAGCTCCCGCCTCTACAACGTACAGGACCCAGAAACCCAG
CAGAATCTTTGCAGGCTGGTTCAGGAAGGAGCCCAGGTGGCTGCCATGGACCTATACGAATTTAAAAAGT
GTTGGAAGAAGTTTGTGGACAATGGTGGCAGGCGATTCAGGCCTTGGAAAAGACTGCTTACAAATTTTAG
ATACCAGGATTCTAAGCTTCAGGAGATTCTGAGGCGAATGGACCCGCTAAGTGAAGAGGAATTTTACTCG
CAGTTTTACAACCAACGAGTCAAGCATCTCTGCTACTACCACCGCATGAAGCCCTATCTATGCTACCAGC
TGGAGCAGTTCAATGGCCAAGCGCCACTCAAAGGCTGCCTGCTAAGCGAGAAAGGCAAACAGCATGCAGA
AATCCTCTTCCTTGATAAGATTCGGTCCATGGAGCTGAGCCAAGTGACAATCACCTGCTACCTCACCTGG
AGCCCCTGCCCAAACTGTGCCTGGCAACTGGCGGCATTCAAAAGGGATCGTCCAGATCTAATTCTGCATA
TCTACACCTCCCGCCTGTATTTCCACTGGAAGAGGCCCTTCCAGAAGGGGCTGTGTTCTCTGTGGCAATC
AGGGATCCTGGTGGACGTCATGGACCTCCCACAGTTTACTGACTGCTGGACAAACTTTGTGAACCCGAAA
AGGCCGTTTTGGCCATGGAAAGGATTGGAGATAATCAGCAGGCGCACACAAAGGCGGCTCCGCAGGATCA
AGGAGTCCTGGGGTCTGCAAGATTTGGTGAATGACTTTGGAAACCTACAGCTTGGACCCCCGATGTCTTG
A

Translation (396 aa):
MGPFCLGCSHRKCYSPIRNLISQETFKFHFKNLGYAKGRKDTFLCYEVTRKDCDSPVSLHHGVFKNKDNI
HAEICFLYWFHDKVLKVLSPREEFKITWYMSWSPCFECAEQIVRFLATHHNLSLDIFSSRLYNVQDPETQ
QNLCRLVQEGAQVAAMDLYEFKKCWKKFVDNGGRRFRPWKRLLTNFRYQDSKLQEILRRMDPLSEEEFYS
QFYNQRVKHLCYYHRMKPYLCYQLEQFNGQAPLKGCLLSEKGKQHAEILFLDKIRSMELSQVTITCYLTW
SPCPNCAWQLAAFKRDRPDLILHIYTSRLYFHWKRPFQKGLCSLWQSGILVDVMDLPQFTDCWTNFVNPK
RPFWPWKGLEIISRRTQRRLRRIKESWGLQDLVNDFGNLQLGPPMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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