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Report for CCDS84242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84242.1 Public Mus musculus 16 Alcam 23 108 98 CCDS HistoryNCBI Gene:11658Re-query CCDS DB by CCDS ID:84242.1Re-query CCDS DB by GeneID:11658See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170035.7 ENSMUSP00000129714.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170035.7Link to Ensembl Protein Viewer:ENSMUSP00000129714.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170035Re-query CCDS DB by Protein ID:ENSMUSP00000129714
Original member Current member NCBI NM_001331110.1 NP_001318039.1 Accepted alive Link to Nucleotide Sequence:NM_001331110.1Link to Protein Sequence:NP_001318039.1Re-query CCDS DB by Nucleotide ID:NM_001331110Re-query CCDS DB by Protein ID:NP_001318039Link to BLAST:NP_001318039.1

Chromosomal Locations for CCDS 84242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 52253149 52253236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52268382 52268499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52270647 52270779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52273910 52274043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52274147 52274282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52276788 52276900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52288918 52289050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52290877 52291004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52295024 52295206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52295663 52295750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52296920 52296984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52305559 52305778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52309812 52309912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52452393 52452465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGCATCTAAGGTGTCCCCTTCTTGCCGTCTGGTTTTCTGCCTCTTGATCTCCGCCGCGGTCCTCAGAC
CAGGCCTTGGATGGTACACTGTCAACTCAGCATATGGAGACACCATTGTCATGCCTTGCCGTCTCGATGT
ACCTCAGAACCTCATGTTTGGCAAATGGAAATATGAAAAGCCCGATGGGTCCCCAGTATTTATTGCATTC
CGATCTTCTACGAAGAAAAGTGTGCAGTATGATGATGTCCCAGAGTACAAGGACAGACTGAGCCTCTCAG
AAAACTACACTTTGTCTATCGCCAATGCTAAGATCAGTGATGAGAAGAGATTTGTGTGCATGCTAGTGAC
CGAGGACAATGTGTTTGAAGCACCTACCCTAGTCAAGGTGTTCAAGCAACCATCTAAACCTGAAATTGTA
AACAAAGCACCCTTTCTTGAAACAGATCAGCTGAAAAAGTTAGGTGACTGCATTTCAAGAGACAGTTACC
CAGATGGCAACATCACATGGTACAGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGAGGTGGCCATACT
TTTTAAAAAGGAAATTGATCCAGGAACTCAGTTGTATACCGTGACTTCCTCCTTGGAGTACAAGACAACC
AGATCTGACATACAAATGCCATTCACCTGTTCTGTGACATATTATGGACCCTCCGGCCAGAAAACAATTT
ATTCCGAACAAGAAATCTTTGATATTTACTATCCTACAGAGCAGGTGACAATACAAGTGCTGCCACCAAA
AAATGCCATCAAAGAAGGGGACAACATCACCCTTCAGTGTTTGGGGAATGGCAACCCACCTCCTGAGGAG
TTCATGTTTTACTTACCAGGACAGCCTGAAGGCATAAGAAGCTCAAACACTTACACACTGACAGATGTGA
GACGCAATGCCACAGGGGACTACAAATGCTCACTCATTGACAAAAGGAACATGGCGGCTTCAACGACCAT
CACAGTTCACTACTTGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTG
CCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTGTGGATGAAGGATAACATCCGGCTCC
GGTCCAGCCCTTCCTTTTCCAGTCTTCATTATCAGGATGCTGGGAACTATGTCTGTGAAACTGCTCTTCA
GGAGGTTGAGGGACTGAAGAAAAGGGAGTCGCTGACCCTCATTGTAGAAGGGAAACCTCAAATCAAAATG
ACTAAGAAAACTGACCCCAGTGGACTGTCTAAAACTATAATCTGCCACGTGGAAGGGTTTCCAAAGCCAG
CTATACATTGGACCATTACCGGCAGTGGGAGCGTCATAAACCAAACAGAGGAGTCTCCTTATATTAATGG
CAGGTATTATAGTAAAATTATCATTTCCCCTGAGGAGAATGTAACATTAACTTGCACAGCAGAAAACCAA
CTGGAGAGAACAGTAAACTCCCTGAATGTCTCTGCGAATGAAAACAGAGAAAAGGTGAATGACCAGGCAA
AACTGATTGTGGGAATTGTCGTTGGTCTCCTCCTCGCTGCCCTCGTTGCTGGTGTCGTCTACTGGCTGTA
CATGAAGAAGTCCAAAACTGCATCAAAACATGTAAACAAGGACCTTGGTAATATGGAGGAAAATAAAAAG
CTGGAAGAAAACAATCACAAAACAGAAGCCTAA

Translation (570 aa):
MASKVSPSCRLVFCLLISAAVLRPGLGWYTVNSAYGDTIVMPCRLDVPQNLMFGKWKYEKPDGSPVFIAF
RSSTKKSVQYDDVPEYKDRLSLSENYTLSIANAKISDEKRFVCMLVTEDNVFEAPTLVKVFKQPSKPEIV
NKAPFLETDQLKKLGDCISRDSYPDGNITWYRNGKVLQPVEGEVAILFKKEIDPGTQLYTVTSSLEYKTT
RSDIQMPFTCSVTYYGPSGQKTIYSEQEIFDIYYPTEQVTIQVLPPKNAIKEGDNITLQCLGNGNPPPEE
FMFYLPGQPEGIRSSNTYTLTDVRRNATGDYKCSLIDKRNMAASTTITVHYLDLSLNPSGEVTKQIGDTL
PVSCTISASRNATVVWMKDNIRLRSSPSFSSLHYQDAGNYVCETALQEVEGLKKRESLTLIVEGKPQIKM
TKKTDPSGLSKTIICHVEGFPKPAIHWTITGSGSVINQTEESPYINGRYYSKIIISPEENVTLTCTAENQ
LERTVNSLNVSANENREKVNDQAKLIVGIVVGLLLAALVAGVVYWLYMKKSKTASKHVNKDLGNMEENKK
LEENNHKTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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