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Report for CCDS37834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37834.1 Public Mus musculus 18 Ndst1 23 108 98 CCDS HistoryNCBI Gene:15531Re-query CCDS DB by CCDS ID:37834.1Re-query CCDS DB by GeneID:15531See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169273.1 ENSMUSP00000126623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169273.1Link to Ensembl Protein Viewer:ENSMUSP00000126623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169273Re-query CCDS DB by Protein ID:ENSMUSP00000126623
Original member Current member EBI ENSMUST00000237783.1 ENSMUSP00000158312.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237783.1Link to Ensembl Protein Viewer:ENSMUSP00000158312.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237783Re-query CCDS DB by Protein ID:ENSMUSP00000158312
Original member Current member NCBI NM_001348100.1 NP_001335029.1 Accepted alive Link to Nucleotide Sequence:NM_001348100.1Link to Protein Sequence:NP_001335029.1Re-query CCDS DB by Nucleotide ID:NM_001348100Re-query CCDS DB by Protein ID:NP_001335029Link to BLAST:NP_001335029.1
Original member Current member NCBI NM_001348101.1 NP_001335030.1 Accepted alive Link to Nucleotide Sequence:NM_001348101.1Link to Protein Sequence:NP_001335030.1Re-query CCDS DB by Nucleotide ID:NM_001348101Re-query CCDS DB by Protein ID:NP_001335030Link to BLAST:NP_001335030.1
Original member Current member NCBI NM_001348102.1 NP_001335031.1 Accepted alive Link to Nucleotide Sequence:NM_001348102.1Link to Protein Sequence:NP_001335031.1Re-query CCDS DB by Nucleotide ID:NM_001348102Re-query CCDS DB by Protein ID:NP_001335031Link to BLAST:NP_001335031.1
Original member Current member NCBI NM_001348103.1 NP_001335032.1 Accepted alive Link to Nucleotide Sequence:NM_001348103.1Link to Protein Sequence:NP_001335032.1Re-query CCDS DB by Nucleotide ID:NM_001348103Re-query CCDS DB by Protein ID:NP_001335032Link to BLAST:NP_001335032.1
Original member Current member NCBI NM_008306.5 NP_032332.2 Accepted alive Link to Nucleotide Sequence:NM_008306.5Link to Protein Sequence:NP_032332.2Re-query CCDS DB by Nucleotide ID:NM_008306Re-query CCDS DB by Protein ID:NP_032332Link to BLAST:NP_032332.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335029.1 882 Q3UHN9-1 882 100% 0 0
NP_001335030.1 882 Q3UHN9-1 882 100% 0 0
NP_001335031.1 882 Q3UHN9-1 882 100% 0 0
NP_001335032.1 882 Q3UHN9-1 882 100% 0 0
NP_032332.2 882 Q3UHN9-1 882 100% 0 0

Chromosomal Locations for CCDS 37834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 60689245 60689364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60689964 60690066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60691178 60691287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60691929 60692099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60695336 60695510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60697067 60697190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60698439 60698535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60699508 60699690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60700372 60700500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60702773 60702958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60703737 60703891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60705076 60705163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60707601 60708095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60712723 60713235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2649 nt):
ATGCCTGCCCTGGCGTGCCTCCGGAGGCTGTGTCGGCACCTGTCCCCACAGGCTGTCCTGTTCCTGCTGT
TCGTCTTCTGCCTGTTCAGCGTTTTTGTCTCTGCCTACTACCTATATGGTTGGAACCGGGGCCTTGAGCC
CTCGGCAGATGCTTCCGAGTCTGACTGTGGGGACCCGCCACCTGTCGCCCCTAGCCGCCTCCTGCCAATC
AAGCCCGTGCAGGCGGTTGCCCCTTCCCGAACAGACCCACTGGTGCTGGTATTTGTGGAGAGCCTTTATT
CACAGCTGGGCCAGGAGGTGGTGGCAATCCTGGAATCCAGTCGCTTCAAATACCGGACAGAGATTGCACC
GGGCAAGGGGGACATGCCCACACTCACAGACAAGGGCCGTGGCCGCTTCGCCCTCATCATCTACGAGAAC
ATCCTCAAGTATGTCAACCTGGATGCCTGGAACCGGGAGCTGCTGGACAAGTACTGTGTGGCCTACGGCG
TGGGCATCATTGGATTCTTCAAGGCCAATGAGAACAGCCTGCTGAGTGCACAGCTCAAAGGCTTCCCTCT
CTTCCTGCATTCGAACCTGGGCTTGAAAGACTGCAGCATCAACCCCAAGTCACCACTGCTCTATGTGACA
CGGCCCAGTGAGGTAGAGAAAGGCGTGCTGCCCGGAGAGGATTGGACTGTGTTCCAGTCCAACCATTCTA
CCTACGAACCAGTGCTGTTGGCCAAGACACGCTCCTCCGAATCCATCCCACACCTGGGTGCTGATGCTGG
CCTGCATGCTGCGCTGCACGCTACTGTGGTCCAGGACCTGGGTCTCCACGATGGCATCCAGCGTGTGCTC
TTTGGCAACAACCTCAACTTTTGGCTGCATAAGCTTGTCTTCGTGGATGCTGTGGCCTTCCTCACGGGGA
AGCGCCTCTCACTGCCTTTGGACCGATACATCCTGGTGGATATTGATGACATTTTTGTGGGCAAGGAGGG
CACACGCATGAAGGTGGAGGATGTGAAGGCCCTGTTTGATACACAGAATGAACTCCGCACACATATTCCA
AACTTCACCTTCAACCTGGGCTACTCAGGGAAATTCTTCCACACAGGTACGGATGCTGAGGATGCTGGCG
ACGATCTGCTGTTGTCCTATGTGAAAGAGTTCTGGTGGTTCCCCCACATGTGGAGCCATATGCAACCCCA
CCTCTTCCACAACCAATCTGTGCTGGCAGAGCAGATGGCCCTGAACAAGAAGTTCGCTGTCGAGCACGGC
ATCCCCACAGATATGGGCTATGCGGTGGCGCCCCACCACTCCGGTGTGTACCCTGTGCACGTGCAGCTGT
ATGAGGCCTGGAAGCAAGTGTGGGGCATCCGTGTGACCAGCACAGAGGAGTACCCACATCTGAAGCCGGC
CCGGTACCGCCGTGGCTTTATCCACAATGGCATCATGGTCCTCCCTCGGCAGACCTGTGGCCTCTTTACA
CACACCATCTTCTACAACGAGTACCCTGGAGGCTCCAGTGAGCTGGACAAGATCATCAATGGGGGCGAGC
TCTTCCTCACTGTGCTCCTCAATCCTATCAGCATCTTCATGACACACTTATCCAACTATGGAAATGACCG
CCTGGGACTATACACCTTCAAGCACCTGGTGCGCTTCCTGCACTCCTGGACCAACCTGAGGCTGCAGACT
CTGCCCCCCGTGCAGCTGGCCCAGAAGTACTTTCAGATCTTTTCTGAGGAGAAGGACCCGCTTTGGCAGG
ATCCCTGTGAGGACAAACGCCACAAGGACATCTGGTCTAAGGAGAAGACATGTGACCGCTTCCCAAAGCT
TCTTATCATTGGCCCCCAGAAAACAGGCACCACGGCCCTCTACCTGTTCCTGGGCATGCACCCGGACCTC
AGCAGCAACTACCCCAGCTCCGAGACCTTCGAGGAGATCCAGTTTTTTAACGGCCACAACTATCACAAAG
GCATCGACTGGTACATGGAGTTCTTCCCTATTCCCTCCAACACCACCTCGGACTTCTACTTTGAGAAAAG
TGCCAACTACTTTGATTCAGAAGTGGCACCACGGCGGGCAGCTGCACTGTTGCCCAAGGCCAAGATCCTC
AGCATCCTCATCAACCCAGCCGACCGGGCTTATTCCTGGTACCAGCACCAGCGAGCCCATGATGACCCAG
TGGCCCTAAAGTACACCTTTCATGAGGTGATCACAGCTGGCCCTGATGCATCCTCAAAGCTGCGTGCCCT
CCAGAACCGGTGCCTGGTCCCAGGCTGGTATGCCACTCATATTGAACGCTGGCTCAGCGCCTTTCATGCC
AACCAGATCCTGGTCTTGGATGGCAAACTGCTGCGAACAGAACCTGCCAAAGTCATGGACACAGTGCAGA
AATTCCTTGGGGTGACCAGCACTGTCGACTACCATAAAACCTTGGCGTTTGATCCAAAGAAGGGATTTTG
GTGCCAACTGCTTGAAGGAGGAAAAACCAAGTGTCTGGGAAAAAGCAAGGGACGGAAATATCCAGAGATG
GACTTGGATTCCCGAGCCTTCCTAAAGGATTACTTCCGGGACCACAACATTGAGCTCTCTAAGCTGCTGT
ATAAGATGGGCCAGACACTGCCCACCTGGCTGCGGGAAGACCTCCAGAACACCAGGTAG

Translation (882 aa):
MPALACLRRLCRHLSPQAVLFLLFVFCLFSVFVSAYYLYGWNRGLEPSADASESDCGDPPPVAPSRLLPI
KPVQAVAPSRTDPLVLVFVESLYSQLGQEVVAILESSRFKYRTEIAPGKGDMPTLTDKGRGRFALIIYEN
ILKYVNLDAWNRELLDKYCVAYGVGIIGFFKANENSLLSAQLKGFPLFLHSNLGLKDCSINPKSPLLYVT
RPSEVEKGVLPGEDWTVFQSNHSTYEPVLLAKTRSSESIPHLGADAGLHAALHATVVQDLGLHDGIQRVL
FGNNLNFWLHKLVFVDAVAFLTGKRLSLPLDRYILVDIDDIFVGKEGTRMKVEDVKALFDTQNELRTHIP
NFTFNLGYSGKFFHTGTDAEDAGDDLLLSYVKEFWWFPHMWSHMQPHLFHNQSVLAEQMALNKKFAVEHG
IPTDMGYAVAPHHSGVYPVHVQLYEAWKQVWGIRVTSTEEYPHLKPARYRRGFIHNGIMVLPRQTCGLFT
HTIFYNEYPGGSSELDKIINGGELFLTVLLNPISIFMTHLSNYGNDRLGLYTFKHLVRFLHSWTNLRLQT
LPPVQLAQKYFQIFSEEKDPLWQDPCEDKRHKDIWSKEKTCDRFPKLLIIGPQKTGTTALYLFLGMHPDL
SSNYPSSETFEEIQFFNGHNYHKGIDWYMEFFPIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPKAKIL
SILINPADRAYSWYQHQRAHDDPVALKYTFHEVITAGPDASSKLRALQNRCLVPGWYATHIERWLSAFHA
NQILVLDGKLLRTEPAKVMDTVQKFLGVTSTVDYHKTLAFDPKKGFWCQLLEGGKTKCLGKSKGRKYPEM
DLDSRAFLKDYFRDHNIELSKLLYKMGQTLPTWLREDLQNTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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