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Report for CCDS19557.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
19557.1 |
Public |
Mus musculus |
5 |
Dao |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:13142](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:19557.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:13142](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 19557.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000112292.8 |
ENSMUSP00000107911.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000112292.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000107911.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000112292](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000107911](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000161610.5 |
ENSMUSP00000125588.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000161610.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000125588.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000161610](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000125588](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001286396.1 |
NP_001273325.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001286396.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001273325.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001286396](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001273325](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001273325.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_010018.3 |
NP_034148.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_010018.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_034148.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_010018](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_034148](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_034148.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 19557.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1038 nt): ATGCGCGTGGCCGTGATCGGAGCAGGAGTCATTGGGCTCTCCACAGCCCTCTGCATTCATGAGCGTTACC ACCCAACACAGCCACTGCACATGAAGATCTATGCAGATCGATTCACCCCGTTCACCACGAGCGATGTGGC CGCCGGCCTCTGGCAGCCTTATCTCTCTGACCCCAGCAACCCTCAGGAGGCGGAGTGGAGCCAGCAAACG TTTGATTACCTGCTGAGCTGCCTCCATTCTCCAAACGCTGAAAAAATGGGCCTGGCCCTAATCTCAGGCT ACAACCTCTTCCGAGATGAAGTTCCGGACCCTTTCTGGAAAAACGCAGTTCTGGGATTCCGGAAGCTGAC CCCCAGTGAGATGGACCTGTTCCCTGATTATGGCTACGGCTGGTTCAATACAAGCCTCCTTCTAGAGGGG AAGAGCTACCTGCCATGGCTAACTGAGAGGTTAACTGAGAGGGGAGTGAAGCTTATCCATCGGAAGGTGG AGTCTCTCGAAGAGGTGGCAAGAGGAGTGGATGTGATTATCAACTGCACCGGGGTGTGGGCCGGGGCCCT GCAAGCAGATGCCTCCCTGCAGCCAGGCCGGGGCCAGATCATCCAGGTGGAGGCCCCTTGGATTAAACAC TTCATCCTCACCCATGATCCTAGCCTTGGTATCTACAACTCTCCGTACATCATCCCAGGTTCCAAGACAG TTACGCTCGGGGGTATATTCCAGCTGGGGAACTGGAGCGGGTTAAACAGCGTCCGTGACCACAATACCAT TTGGAAGAGCTGCTGTAAACTGGAGCCCACCCTGAAGAATGCAAGAATTGTGGGTGAACTCACTGGCTTC CGGCCAGTCCGGCCTCAGGTCCGGCTAGAAAGAGAATGGCTTCATTTTGGATCTTCAAGTGCAGAGGTCA TCCACAACTATGGTCATGGAGGTTACGGGCTCACAATCCACTGGGGTTGTGCAATGGAGGCGGCCAACCT CTTCGGGAAAATTCTAGAGGAAAAGAAGTTGTCCAGGTTGCCTCCCTCCCACCTCTGA
Translation (345 aa): MRVAVIGAGVIGLSTALCIHERYHPTQPLHMKIYADRFTPFTTSDVAAGLWQPYLSDPSNPQEAEWSQQT FDYLLSCLHSPNAEKMGLALISGYNLFRDEVPDPFWKNAVLGFRKLTPSEMDLFPDYGYGWFNTSLLLEG KSYLPWLTERLTERGVKLIHRKVESLEEVARGVDVIINCTGVWAGALQADASLQPGRGQIIQVEAPWIKH FILTHDPSLGIYNSPYIIPGSKTVTLGGIFQLGNWSGLNSVRDHNTIWKSCCKLEPTLKNARIVGELTGF RPVRPQVRLEREWLHFGSSSAEVIHNYGHGGYGLTIHWGCAMEAANLFGKILEEKKLSRLPPSHL
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