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Report for CCDS15488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15488.1 Public Mus musculus 1 Ufc1 23 108 98 CCDS HistoryNCBI Gene:66155Re-query CCDS DB by CCDS ID:15488.1Re-query CCDS DB by GeneID:66155See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080001.8 ENSMUSP00000078914.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080001.8Link to Ensembl Protein Viewer:ENSMUSP00000078914.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080001Re-query CCDS DB by Protein ID:ENSMUSP00000078914
Original member Current member EBI ENSMUST00000111302.3 ENSMUSP00000106933.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111302.3Link to Ensembl Protein Viewer:ENSMUSP00000106933.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111302Re-query CCDS DB by Protein ID:ENSMUSP00000106933
Original member Current member NCBI NM_001360931.1 NP_001347860.1 Accepted alive Link to Nucleotide Sequence:NM_001360931.1Link to Protein Sequence:NP_001347860.1Re-query CCDS DB by Nucleotide ID:NM_001360931Re-query CCDS DB by Protein ID:NP_001347860Link to BLAST:NP_001347860.1
Original member Current member NCBI NM_001360932.1 NP_001347861.1 Accepted alive Link to Nucleotide Sequence:NM_001360932.1Link to Protein Sequence:NP_001347861.1Re-query CCDS DB by Nucleotide ID:NM_001360932Re-query CCDS DB by Protein ID:NP_001347861Link to BLAST:NP_001347861.1
Original member Current member NCBI NM_025388.3 NP_079664.1 Accepted alive Link to Nucleotide Sequence:NM_025388.3Link to Protein Sequence:NP_079664.1Re-query CCDS DB by Nucleotide ID:NM_025388Re-query CCDS DB by Protein ID:NP_079664Link to BLAST:NP_079664.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347860.1 167 Q9CR09 167 100% 0 0
NP_001347861.1 167 Q9CR09 167 100% 0 0
NP_079664.1 167 Q9CR09 167 100% 0 0

Chromosomal Locations for CCDS 15488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171288891 171288971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171289171 171289261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171289518 171289594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171289884 171289947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171290149 171290216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171294634 171294756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCGGACGAGGCCACTCGGCGGGTCGTGTCTGAGATCCCGGTGCTGAAGACCAACGCCGGACCCCGAG
ATCGGGAATTGTGGGTGCAGCGACTAAAGGAGGAATATCAGTCCCTGATCCGGTATGTGGAGAACAACAA
GAATTCGGACAATGATTGGTTCCGACTGGAGTCCAACAAGGAAGGGACCCGGTGGTTTGGAAAATGCTGG
TACATCCACGATTTCCTCAAATATGAGTTCGACATCGAGTTTGAAATTCCTATCACATATCCCACTACTG
CTCCGGAAATTGCAGTCCCTGAGCTGGACGGGAAGACAGCAAAGATGTACAGGGGTGGCAAAATATGTCT
GACTGATCATTTCAAACCTTTGTGGGCCAGGAATGTGCCTAAGTTTGGACTAGCTCATCTCATGGCCCTG
GGGCTGGGTCCTTGGCTGGCAGTGGAAGTCCCCGATCTGATCCAGAAGGGTGTGATCCAGCACAAAGAAA
AATGCAGCCAATGA

Translation (167 aa):
MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNSDNDWFRLESNKEGTRWFGKCW
YIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL
GLGPWLAVEVPDLIQKGVIQHKEKCSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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