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Report for CCDS52517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52517.1 Public Mus musculus 8 Fam90a1a 23 108 98 CCDS HistoryNCBI Gene:97476Re-query CCDS DB by CCDS ID:52517.1Re-query CCDS DB by GeneID:97476See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110741.1 ENSMUSP00000106369.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110741.1Link to Ensembl Protein Viewer:ENSMUSP00000106369.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110741Re-query CCDS DB by Protein ID:ENSMUSP00000106369
Original member Current member NCBI NM_001081662.1 NP_001075131.1 Accepted alive Link to Nucleotide Sequence:NM_001081662.1Link to Protein Sequence:NP_001075131.1Re-query CCDS DB by Nucleotide ID:NM_001081662Re-query CCDS DB by Protein ID:NP_001075131Link to BLAST:NP_001075131.1

Chromosomal Locations for CCDS 52517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21959242 21959352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21961028 21961203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21961412 21961493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21963000 21963920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGAGTCACAAATCAAGGGCCTTCCAGCTGTTCCAGCTCAAACAGCCCAGGGAGAGCCAAGAAGCTCAT
GGGAACAGACACTTCCATCACTGAAAAAGGAGAACCATATGGTGAAATGCAGAAACTGTGGGGGCTTTGG
CCACAATGTAAGAAGCAGAATGTGCCCCATGAAGCAAGGCCATGTGCTCCTAGTCTCCCAGCCTCTGGGA
GCCAGGAAGGAGAAAGAGAATGGGGATCCTTGCAGGCCCCATGGTCTACAGAAACTCAGTCAAGACACCA
GACAGAGGTTTGATGAGCAGCAGAGGAAAGCTCCCTTCCAGAAATTTCCAATGAAGCCGCAAAAGGGGGA
CCAGCAGGTCAACTTGGCTCAGCCACGGATGCCAAGCATCCCTGGGATCAGAAAGAGGAGTGCATCTCCA
GTCAAAACATCTCTTGGGAAGCAGATGTGCCCTGGAAAACCTGTCCTCCAATGCTTTGACAGCTCCTACA
TCTTACATTCCAGGCAGAAGGAAGGTCGGAGGATGGCTGTTGCTGGTGTTGCCAAGCTAGTGCTCAGGCA
GGATGGAAGAAACTCGGCCTCAGAAGAGCTACTGGATCAAAAGGGTACCTCATGTCAACACCCAGTTGCT
GTCCCCAAAAGTAATGCAAGCAGTGAACTGTTCCACAAAGAGCCGAAAGCCCAGGGTCCCAGTAGGAAAA
CGCAGCCCAGCCAGCATCCTGTCATCCACCAGAATAGACAAAACCCCAAACTCAGCTTTGGGGCCCCAGG
TAAGGAAGCTTCCTGGTGCCCCACACAGCCTAGCCAGAATCCTCTGAAGAAACAAAGACTTAACTCTACA
GATGCACCAGAGAAGAGCCATGCAAGGACTGGTTCCAAGGGCACCCTGGACAGTCAGTCTCCTCCCATTG
CCAACAGACTTGGACTGAAAGGTGCAAATGAAATGAGCAAGAAAATAACAGCCCAGGATCCCAGCACTGA
CCAACAACAGCTATATAGCAGGGCTGCTCTGTTCGCAACCAGACCCTGTATAGAGTTCCACAGGGCATCC
GCTGGCCGTGTTGCAGACCAAGCCCTGAGAATGATCTTCACCAGACACGGTAGTAACTGCTGGAGCTCCA
GGTTCCTGTCAGTGCCCCCACCACTTCCCCTTGAGAAGCAAACACCTCCTTCGGAGAGCCCTACCTTCCC
TGAGGAAGGAGAGGTAGCAGGATCACAGGTCAAAGTGAGCATCCTCTATGAGGACCTTCAGGTCTCCTCC
TCCTCCTCAGAGAACAGTGATGGAGAATGA

Translation (429 aa):
MESQIKGLPAVPAQTAQGEPRSSWEQTLPSLKKENHMVKCRNCGGFGHNVRSRMCPMKQGHVLLVSQPLG
ARKEKENGDPCRPHGLQKLSQDTRQRFDEQQRKAPFQKFPMKPQKGDQQVNLAQPRMPSIPGIRKRSASP
VKTSLGKQMCPGKPVLQCFDSSYILHSRQKEGRRMAVAGVAKLVLRQDGRNSASEELLDQKGTSCQHPVA
VPKSNASSELFHKEPKAQGPSRKTQPSQHPVIHQNRQNPKLSFGAPGKEASWCPTQPSQNPLKKQRLNST
DAPEKSHARTGSKGTLDSQSPPIANRLGLKGANEMSKKITAQDPSTDQQQLYSRAALFATRPCIEFHRAS
AGRVADQALRMIFTRHGSNCWSSRFLSVPPPLPLEKQTPPSESPTFPEEGEVAGSQVKVSILYEDLQVSS
SSSENSDGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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