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Report for CCDS83877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83877.1 Public Mus musculus 11 Itga3 23 108 98 CCDS HistoryNCBI Gene:16400Re-query CCDS DB by CCDS ID:83877.1Re-query CCDS DB by GeneID:16400See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107739.7 ENSMUSP00000103368.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107739.7Link to Ensembl Protein Viewer:ENSMUSP00000103368.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107739Re-query CCDS DB by Protein ID:ENSMUSP00000103368
Original member Current member NCBI NM_001306071.1 NP_001293000.1 Accepted alive Link to Nucleotide Sequence:NM_001306071.1Link to Protein Sequence:NP_001293000.1Re-query CCDS DB by Nucleotide ID:NM_001306071Re-query CCDS DB by Protein ID:NP_001293000Link to BLAST:NP_001293000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293000.1 1022 Q62470-3 1022 100% 0 0

Chromosomal Locations for CCDS 83877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95046480 95046590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95046921 95047046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95051452 95051550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95052444 95052557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95053225 95053347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95053732 95053914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95054075 95054177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95055696 95055773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95055857 95055936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95056441 95056512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95056704 95056851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057084 95057181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057271 95057420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057967 95058103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95058212 95058279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059324 95059410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059556 95059692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059779 95059867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95061878 95062074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95062553 95062763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95063135 95063221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95065763 95066012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95068225 95068304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95068712 95068952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3069 nt):
ATGTCCTATCTCCAGACATTGGTATGGAGCCCATGTTCAGAGAGTGTGGATTTGCAGGCTGACTGGAGGG
AGGCTTGCAAAGCCAGGCTGACCCACCCGCCTTCCTTTTCCAGCCTTCTGGCCGGGGCTCCCCGGGACCT
CGCTGTGGGTGATGACTATACCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGAC
GACTGTGAACGGATGGACATTTCAGAGAAAAGTGACCCTGACCATCACATTATTGAGGATATGTGGCTTG
GAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTGGTCTGTGCCCATCGGTACACCAAGGTGCT
GTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATGTGCGTGGCAATGACCTACAGCTC
GACCCCGGCGATGACTGGCAGACATACCACAACGAGATGTGTAACAGCAACACTGACTACTTGCAGACCG
GCATGTGCCAGCTGGGCACCAGCGGCGGCTTCACCCAGAACACCGTATACTTCGGTGCCCCTGGTGCCTA
CAACTGGAAAGGAAACAGCTACATGATTCAGCGGAAGGACTGGGATTTATCTGAATATAGCTACAGGGGC
TCAGAGGAGCAAGGAAACCTTTATATTGGGTACACGGTGCAGGTAGGCAACGCCATCCTACATCCCACGG
ACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAGCAAGA
GTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTTATTTTGGCAGTGCC
ATTGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGACCTCCTGGTGGGTGCTCCCTACTACTTCGAAC
GGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCGCATCCTTCCCTGATCAACC
TTCCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTGGCATCTCTATAGCCAGCATCGGTGACATCAAC
CAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACCACA
GCAGCTCCGGGGGGCTCCTCAGGCAGCCCCAGCAGATAATCCATGGAGAGAAACTCGGACTGCCAGGCTT
GGCCACCTTCGGCTACTCCCTGAGCGGGAAGATGGATGTGGATGAAAACCTTTACCCAGACCTGCTAGTA
GGGAGCCTGTCGGACCACATCGTGCTGCTGCGGGCCCGGCCTGTCATCAATATCCTCCATAGGACCTTGG
TGGCCAGGCCAGCTGTGTTGGACCCTGCGCTTTGTACAGCTACCTCCTGTGTTCAGGTGGAGCTGTGTTT
TGCCTACAACCAGAGCGCTGGGAACCCCAACTACAGGCGGAACATCACCCTGGCTTACACACTGGAGGCT
GACAGGGACCGACGCCCACCCAGGCTCCGATTTGCCCGCAGCCAGTCATCTGTCTTCCACGGCTTCTTCT
CCATGCCAGAGACACATTGCCAGACACTGGAGTTACTGCTGATGGACAATGTTCGCGATAAACTCCGTCC
TATCGTCATTGCCATGAACTACTCCTTACCTCTGCGCATGCCTGATCGCCTCAAGCTCGGCTTGCGGTCT
CTGGATGCCTACCCAGTCCTCAACCAGGCACAGGCTATGGAGAATCACACTGAGGTCCACTTCCAGAAAG
AGTGCGGGCCAGACAACAAGTGCGACAGCAACCTGCAGATGCGAGCAGCCTTCCTGTCTGAGCAGCTGCA
GCCTCTAAGCAGGCTCCAGTACAGCAGAGACACTAAGAAACTGTTTTTGAGCATCAATGTGACCAATTCA
CCGAGCAGCCAACGGGCTGGGGAAGATGCGCATGAGGCATTGCTCACCCTAGAGGTGCCATCCGCCCTGC
TACTGTCCTCCGTGCGCCCGTCTGGGACCTGCCAAGCTAATAACGAGACCATCCTGTGTGAGCTAGGAAA
CCCCTTCAAACGGAACCAGAGGATGGAGCTGCTCATTGCCTTTGAGGTCATCGGGGTAACGTTGCACACG
AGGGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAGTCACCAGGACAACTTGCAGCCCGTACTCCTGA
CTTTGCAGGTGGACTACACCCTCCAGGCCTCGCTCAGCTTAATGAATCATCGGTTGCAGAGCTTCTTTGG
TGGCACAGTGATGGGTGAGGCTGCCATGAAAACTGCGGAGGATGTGGGAAGTCCCCTGAAATATGAATTC
CAGGTGAGCCCAGTGGGAGATGGGCTGGCAGCCTTGGGCACACTGGTTCTAGGTCTGGAGTGGCCCTATG
AAGTTACCAATGGCAAGTGGCTGCTGTACCCCACGGAGATCACCATCCATAGCAATGGTTCCTGGCCCTG
CCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTGACCCTGGAGTCACACCACTGTCG
CCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGAGACCAGAGTTCCCCGCCTGTCACACTAGCTGCTG
CCAAAAAAGCCAAGTCTGAGACTGTGTTGACCTGCTCCAATGGCCGTGCCCGCTGTGTGTGGCTGGAGTG
CCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCACGGGTGTGGAACAGCACCTTCATT
GAGGACTACAAAGACTTTGACAGAGTCAGGGTAGATGGCTGGGCTACCCTGTTCCTGAGAACCAGCATCC
CTACCATCAACATGGAGAACAAGACCACATGGTTCTCTGTGGACATTGACTCAGAGCTGGTGGAGGAGCT
GCCGGCTGAGATTGAGCTGTGGTTGGTGCTTGTGGCCGTGGGTGCTGGGTTGCTGCTGCTGGGGCTCATC
ATCCTCCTCTTGTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTCGTGCCCTGTATGAAGCTAAGAGGC
AGAAGGCTGAGATGAAGAGCCAGCCGTCAGAGACAGAAAGGCTGACCGACGACTACTGA

Translation (1022 aa):
MSYLQTLVWSPCSESVDLQADWREACKARLTHPPSFSSLLAGAPRDLAVGDDYTNRTGAVYLCPLTAHKD
DCERMDISEKSDPDHHIIEDMWLGVTVASQGPAGRVLVCAHRYTKVLWSGLEDQRRMVGKCYVRGNDLQL
DPGDDWQTYHNEMCNSNTDYLQTGMCQLGTSGGFTQNTVYFGAPGAYNWKGNSYMIQRKDWDLSEYSYRG
SEEQGNLYIGYTVQVGNAILHPTDIITVVTGAPRHQHMGAVFLLKQESGGDLQRKQVLKGTQVGAYFGSA
IALADLNNDGWQDLLVGAPYYFERKEEVGGAVYVFMNQAGASFPDQPSLLLHGPSRSAFGISIASIGDIN
QDGFQDIAVGAPFEGLGKVYIYHSSSGGLLRQPQQIIHGEKLGLPGLATFGYSLSGKMDVDENLYPDLLV
GSLSDHIVLLRARPVINILHRTLVARPAVLDPALCTATSCVQVELCFAYNQSAGNPNYRRNITLAYTLEA
DRDRRPPRLRFARSQSSVFHGFFSMPETHCQTLELLLMDNVRDKLRPIVIAMNYSLPLRMPDRLKLGLRS
LDAYPVLNQAQAMENHTEVHFQKECGPDNKCDSNLQMRAAFLSEQLQPLSRLQYSRDTKKLFLSINVTNS
PSSQRAGEDAHEALLTLEVPSALLLSSVRPSGTCQANNETILCELGNPFKRNQRMELLIAFEVIGVTLHT
RDLPVLLQLSTSSHQDNLQPVLLTLQVDYTLQASLSLMNHRLQSFFGGTVMGEAAMKTAEDVGSPLKYEF
QVSPVGDGLAALGTLVLGLEWPYEVTNGKWLLYPTEITIHSNGSWPCQPSGNLVNPLNLTLSDPGVTPLS
PQRRRRQLDPGGDQSSPPVTLAAAKKAKSETVLTCSNGRARCVWLECPLPDTSNITNVTVKARVWNSTFI
EDYKDFDRVRVDGWATLFLRTSIPTINMENKTTWFSVDIDSELVEELPAEIELWLVLVAVGAGLLLLGLI
ILLLWKCGFFKRARTRALYEAKRQKAEMKSQPSETERLTDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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