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Report for CCDS48460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48460.1 Public Mus musculus 1 Wdr64 23 108 98 CCDS HistoryNCBI Gene:75820Re-query CCDS DB by CCDS ID:48460.1Re-query CCDS DB by GeneID:75820See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094288.9 ENSMUSP00000091846.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094288.9Link to Ensembl Protein Viewer:ENSMUSP00000091846.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094288Re-query CCDS DB by Protein ID:ENSMUSP00000091846
Original member Current member NCBI NM_029453.2 NP_083729.2 Accepted alive Link to Nucleotide Sequence:NM_029453.2Link to Protein Sequence:NP_083729.2Re-query CCDS DB by Nucleotide ID:NM_029453Re-query CCDS DB by Protein ID:NP_083729Link to BLAST:NP_083729.2

Chromosomal Locations for CCDS 48460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175698787 175698931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175705945 175706075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175717279 175717381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175720278 175720381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175724667 175724696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175726389 175726499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175728783 175728997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175731482 175731616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175743546 175743625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175755524 175755663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175763942 175764068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175767006 175767154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175769506 175769629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175772173 175772348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175775575 175775751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175785478 175785608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175789904 175790005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175791193 175791262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175792117 175792153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175792961 175793097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175795083 175795188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175799217 175799275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175800301 175800410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175805854 175806042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175808676 175808781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175810528 175810608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175812012 175812110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175815286 175815366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3255 nt):
ATGGATGCCAAGGATGAGAAGCGGTTCAACCTCGCGCTGCAGATCAACAATTTCAAAGCGTCCTTGGTTG
AGTTCAATAAACTGGTTGAACAGACAACAGCCCAGAAAAAGGAAGAAAGAGCAGGCATATTTATACCAAA
AGAAGATTCAATCGACTATGATAAGTTTTACACCTCGGTACAGCAAATCTTTGGCCCTGAAGTGAAAAAT
CAAGATGTGAAATGTTTTTACAGGAAGCTCTGCAACAATCCTGACGCAGCTTTCGACTGGTGTGAGATCT
TTGGATACTTCTCCACTGATGAAGATTCTCTTACTTCGCAGATGGATGAAGAAAATTTGGTTTTTCTTGT
GTCTAGAAAACAGCGAATTGTGATTGCAGGCAGTAGACGACGTGATGTGATCAAATGCATTGTGAAGGTC
CCACAGCTGGATTTATTGATAACAGCATCTCAGAAAGGATTAATAACTGTCTTCAACAGCCAGATGAGGG
CTCAGACCAGCACCAACGTTACAGATACCTCCTGGATTACAGGCTGCGATTACCTTGGCCAGCTAAAGCG
AATTGTTGCCACCACTGAGAGGACCATTATTGTCTGGGATTATAAAGCTCAAGGGAGCAGCCAGGAGCAC
TACTTTGTCATCAAGCCCATGGACCACTGCCTGCTCTGTGTGTGTGTGGTGCCCCTGCCTGATCAGCTCT
GCAGGGATGACATTCTCCTGGGAGATGATGGTGGGTTTGTGAACAAGTTCACGGTGAGCAGTGATGACTT
TGGATTAAAGCAGGCAAAGACCAAAAAGAAATTACAAACTCAGGTCCTTGACTCGAAGAACTTTAAAAGT
GTTAAAAGGAAACTGCATAATGATTGGGTTATGAAAATCAGATACATTCCAGCTCTCAATTGCTTTGGAT
CCTGTTCCTTAGACAGCGTCCATTCCTTAGTCTTGGAATCCTTGAAGAGACTTGAAGACAATTTGCCTGT
CAGAGAATTTGCCATGCCAAGAGGAGCCAACAGTTTCTGCTACTGCGGTAAAGCAAATGTGATCGTCACT
GGAGGAGATGATAAAGTCCTCCGGCTGTGGCACCCCAACATCAGCACTAAGCCAGTCGGGAAGCTGGTGG
GGCACATGTTCAGCATCACTGAGATCGTAAGCAATGAGAAGGAGCAACACGTCATTAGCCTTTCCTCTGC
AAAGGTCTTCCGGGTGTGGGATATACAGACTCTGTCTGTACTGCAAGTCTTCCACGATAGCCAAGGTGGG
CCAGGAGACATGCAGATTTACTCTATGGTATATGATGCCAACCATGGCATGCTCATTACAGGATCTGGTG
TAATAGACATGTATCCTTTGACCAGGATGATACAGGACACAAAGCAGGTTCCTCACACTCATGAACGAGA
AGTCAACGTCACGCTTTACAACAAGTACTTCCACCAAGTGCTCACGGTCTGCTCAGAGTCTGTAATCAAG
GTATGGGAACTTGAGACTGGTCTCCAAATATACCAAATTCTAGACCCTCATGGCCTCAGTATTGAACTAA
CCTGTGCAGCTATTGATGAAAGTGGATATCTTTTTGCTACAGGAGCATATAATGGAACAGTTAAGATCTG
GGACTTTGGCAGTGGGCAGGAAATGAAAATGATGCCCGAAGGGAAAGACTGGGTGGAGGAGGAACATGGC
CTGATGCGCCTGTTTTTCCTCAAGCCCCAAGTGAAGCAACAGCACCTCATCCTCGCCTTGGAGCGCAATG
GAACTATCAAGATTATCCAGGGAAAGGAAGATGATATCTTCCTCACGGTGATATGGGAGCTGCCGGACGC
CATGCCTTACCTACAATATGGGAGCCATATTGTACATCTGAAGATGTCAACTAAAGAAAGGACAATGGCC
ATTCCTTTCCCAGACGTTGAGTTAATCGTCCAGAAAACCTCCCAACAAACTAATTATAGTCCTATTGTCG
ATGTGGATGTGAACTGCATTGATGTATTTCAAACAGAGGGATATAATCTGATAGCGTGTGGCACAACAAA
TGGCATGATAATCTTATGGAATTTCATAGCAGCTTCTGTCAAAGAAATATACCGGCCCGAGGATTGCTTC
TCTACAGATCCTGAGTTGGATCCCAAACGCTTTCGAATTAATGACATAATGTTCCTCTTCCGAAGTCCTG
AATGTGTAAGGAGATCAAGTCAGGATTCTATATGCTCATCAACCCAATGTGATTCAAGCAAGGGTCCACA
GAGTAGCAAGGGGAGTAAGCAAAGCATTCATGACGCCGATGTCAAAGGTGAGCATACAGACATGGTGGGA
GAGCAGCAGTCAGCAAGCAGGAAACAGCCTGTACCCATCAGCTTCGTGGAACCACAGCCTCCTCTCCTGG
TCTCTGCGCACGAGGATGGACACCTCCGTTTGTGGACGCTGGAGGGGAAGCTCATAAAAGACATGCTGCC
CTTCACGAAGCACTCTGCCATTTCCCTGACGTCACTATACACCGACTCATGCTGCAGGGTACTACTGGCT
GGGAATGTGGAAGGACACGTTATCCTTTGCAGTATTAGTTCCTTCATGGATCCACCTCACGATGAAAAGA
AATTCAAGCAGCTGCTTTCCTGGCGTGCCCATTCTTTAGAAATTATTCAAGTGATCTACGTGGAAGAAAA
GCAGCTGGTGCTTACTGCCTCCATTGATGGCTCAGTGAGGATCTGGAATTCCACCAGTGGTCATTACTGT
GGGTATTTTGGACAACGAAGAATGTTTGACCTTTCCCAAACAAGTGACTTCATTTTGCCTTGTGATGTTA
ATGAATATCCCATAGAGATTAAAGAAGAAAGCAAGTTCACAGAGAAGACACAAAAATATGAATATCCTCT
GATATTTGACCGTGAAAGATGGAAAAAAATGAGCTCAATGTCTTTGCTTTTTAAGCGACCACCTCTCAGT
CCCTTTGAAGTGCAACATGATTTTAAATTTTTCAAGTCTCTTTCTTCTCCAAAGATTCGCCGATATGCTT
TGGAAGGTTTCCTGACAGAAAACCGAGAGGCAGGGATTGTTTTTGGTTCTCTGCCTATATACAGGGTACC
AAGTCCCACGAGTCTAAGATTCCTTCCCCTTATTGGCTCTGAAGTACAAAGAGATTCAGTGGAGGGTGTT
TATATGAAGAAGAAACATGACAAATCACGGAGGAAAAGCCTGAAAAGGAATTTGGTTCCACAGATAAATC
TGGCTTCATCCTTCTTCCCAACCACACCCAAGTGA

Translation (1084 aa):
MDAKDEKRFNLALQINNFKASLVEFNKLVEQTTAQKKEERAGIFIPKEDSIDYDKFYTSVQQIFGPEVKN
QDVKCFYRKLCNNPDAAFDWCEIFGYFSTDEDSLTSQMDEENLVFLVSRKQRIVIAGSRRRDVIKCIVKV
PQLDLLITASQKGLITVFNSQMRAQTSTNVTDTSWITGCDYLGQLKRIVATTERTIIVWDYKAQGSSQEH
YFVIKPMDHCLLCVCVVPLPDQLCRDDILLGDDGGFVNKFTVSSDDFGLKQAKTKKKLQTQVLDSKNFKS
VKRKLHNDWVMKIRYIPALNCFGSCSLDSVHSLVLESLKRLEDNLPVREFAMPRGANSFCYCGKANVIVT
GGDDKVLRLWHPNISTKPVGKLVGHMFSITEIVSNEKEQHVISLSSAKVFRVWDIQTLSVLQVFHDSQGG
PGDMQIYSMVYDANHGMLITGSGVIDMYPLTRMIQDTKQVPHTHEREVNVTLYNKYFHQVLTVCSESVIK
VWELETGLQIYQILDPHGLSIELTCAAIDESGYLFATGAYNGTVKIWDFGSGQEMKMMPEGKDWVEEEHG
LMRLFFLKPQVKQQHLILALERNGTIKIIQGKEDDIFLTVIWELPDAMPYLQYGSHIVHLKMSTKERTMA
IPFPDVELIVQKTSQQTNYSPIVDVDVNCIDVFQTEGYNLIACGTTNGMIILWNFIAASVKEIYRPEDCF
STDPELDPKRFRINDIMFLFRSPECVRRSSQDSICSSTQCDSSKGPQSSKGSKQSIHDADVKGEHTDMVG
EQQSASRKQPVPISFVEPQPPLLVSAHEDGHLRLWTLEGKLIKDMLPFTKHSAISLTSLYTDSCCRVLLA
GNVEGHVILCSISSFMDPPHDEKKFKQLLSWRAHSLEIIQVIYVEEKQLVLTASIDGSVRIWNSTSGHYC
GYFGQRRMFDLSQTSDFILPCDVNEYPIEIKEESKFTEKTQKYEYPLIFDRERWKKMSSMSLLFKRPPLS
PFEVQHDFKFFKSLSSPKIRRYALEGFLTENREAGIVFGSLPIYRVPSPTSLRFLPLIGSEVQRDSVEGV
YMKKKHDKSRRKSLKRNLVPQINLASSFFPTTPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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