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Report for CCDS57342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57342.1 Public Mus musculus 5 Kcnip4 23 108 98 CCDS HistoryNCBI Gene:80334Re-query CCDS DB by CCDS ID:57342.1Re-query CCDS DB by GeneID:80334See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087395.10 ENSMUSP00000084656.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087395.10Link to Ensembl Protein Viewer:ENSMUSP00000084656.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087395Re-query CCDS DB by Protein ID:ENSMUSP00000084656
Original member Current member NCBI NM_001199242.1 NP_001186171.1 Accepted alive Link to Nucleotide Sequence:NM_001199242.1Link to Protein Sequence:NP_001186171.1Re-query CCDS DB by Nucleotide ID:NM_001199242Re-query CCDS DB by Protein ID:NP_001186171Link to BLAST:NP_001186171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186171.1 250 Q6PHZ8-1 250 100% 0 0

Chromosomal Locations for CCDS 57342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 48390909 48390956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 48396005 48396067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 48396651 48396755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 48398479 48398586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 48409795 48409865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 48419212 48419281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 48482531 48482655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 48509659 48509760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 49524641 49524701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGAACGTGAGAAGGGTGGAAAGCATCTCGGCTCAGCTGGAGGAGGCGAGCTCCACAGGCGGTTTCCTCT
ACGCGCAGAACAACACCAAGCGCAGCATTAAAGAGCGGCTCATGAAGCTCTTGCCCTGCTCAGCTGCCAA
AACGTCGTCTCCTGCTATTCAAAACAGCGTGGAAGATGAGCTGGAGATGGCTACTGTCAGGCATCGGCCT
GAAGCCCTGGAGCTGCTGGAGGCCCAGAGCAAATTCACCAAGAAAGAGCTTCAGATTCTTTACAGAGGAT
TTAAGAATGAATGCCCCAGTGGTGTTGTTAATGAAGAAACTTTCAAGGAGATTTACTCACAGTTCTTTCC
ACAGGGAGACTCCACCACATATGCACATTTTCTCTTCAATGCATTCGACACGGACCACAATGGAGCTGTG
AGCTTTGAGGATTTCATCAAAGGTCTTTCCATTTTGCTTCGAGGGACAGTACAAGAAAAACTCAACTGGG
CATTTAATTTGTATGACATAAACAAAGATGGCTACATCACTAAAGAAGAAATGCTGGACATAATGAAAGC
AATCTACGACATGATGGGGAAATGCACATACCCGGTCCTCAAGGAAGATGCTCCCCGACAGCATGTGGAG
ACGTTCTTCCAGAAGATGGACAAAAATAAAGATGGTGTCGTTACCATAGATGAGTTCATTGAAAGTTGCC
AAAAAGATGAAAACATAATGCGCTCCATGCAGCTCTTTGAAAATGTGATCTAG

Translation (250 aa):
MNVRRVESISAQLEEASSTGGFLYAQNNTKRSIKERLMKLLPCSAAKTSSPAIQNSVEDELEMATVRHRP
EALELLEAQSKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAV
SFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVE
TFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQLFENVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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