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Report for CCDS50780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50780.1 Public Mus musculus 2 Ndrg3 23 108 98 CCDS HistoryNCBI Gene:29812Re-query CCDS DB by CCDS ID:50780.1Re-query CCDS DB by GeneID:29812See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069600.12 ENSMUSP00000070052.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069600.12Link to Ensembl Protein Viewer:ENSMUSP00000070052.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069600Re-query CCDS DB by Protein ID:ENSMUSP00000070052
Original member Current member NCBI NM_001355391.1 NP_001342320.1 Accepted alive Link to Nucleotide Sequence:NM_001355391.1Link to Protein Sequence:NP_001342320.1Re-query CCDS DB by Nucleotide ID:NM_001355391Re-query CCDS DB by Protein ID:NP_001342320Link to BLAST:NP_001342320.1
Original member Current member NCBI NM_180956.1 NP_851287.1 Accepted alive Link to Nucleotide Sequence:NM_180956.1Link to Protein Sequence:NP_851287.1Re-query CCDS DB by Nucleotide ID:NM_180956Re-query CCDS DB by Protein ID:NP_851287Link to BLAST:NP_851287.1

Chromosomal Locations for CCDS 50780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156928700 156928881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156929932 156929970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156931216 156931267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156931430 156931465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156934942 156934989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156937327 156937378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156937486 156937551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156938551 156938654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156940357 156940413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156943987 156944073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156944385 156944445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156946017 156946079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156948242 156948362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156950034 156950139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156958467 156958502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156970037 156970093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGATGAACTTCAGGATGTTCAACTCACAGAGATCAAACCGCTTCTAAATGATAAGAATGGCACACGAA
ACTTCCAGGACTTTGACTGTCAGGAACATGACATTGAAACACCGCATGGTATGGTCCACGTCACCATAAG
AGGCTTACCAAAAGGAAACAGACCTGTTATCCTGACATACCACGACATTGGGCTCAACCATAAGTCCTGC
TTCAACACATTCTTCAACTTTGAGGATATGCAAGAGATCACCCAGCACTTTGCTGTCTGTCACGTGGACG
CTCCTGGCCAACAAGAAGCAGCACCCTCCTTCCCCACAGGGTACCAGTACCCCACCATGGATGAGCTAGC
TGAGATGCTGCCTCCTGTTCTCACACACTTAAGTATGAAGAGCATCATTGGTATTGGGGTTGGAGCAGGA
GCCTACATTCTCAGCAGATTTGCACTGAATCATCCAGAGCTGGTGGAAGGTCTTGTGCTCATTAACATTG
ACCCGTGTGCTAAGGGCTGGATTGACTGGGCAGCTTCCAAACTCTCAGGTTTTACCACCAACATTGTGGA
CATAATTCTGGCTCATCACTTTGGCCAGGAGGAGTTGCAGGCCAATTTGGACCTCATTCAAACCTACAGA
CTGCACATTGCTCAAGATATCAACCAAGAAAACCTCCAGCTCTTCCTGGGTTCCTATAATGGGCGCAGAG
ACCTGGAGATCGAAAGGCCTATACTGGGCCAAAATGATAACAGATTGAAAACGCTAAAGTGTTCTACCTT
ACTGGTGGTGGGGGACAATTCACCTGCTGTGGAGGCTGTGGTTGAATGTAATTCTCGCCTCGACCCTATA
AATACAACTTTGCTAAAGATGGCAGACTGTGGAGGACTGCCCCAAGTAGTTCAGCCTGGGAAGCTCACCG
AGGCCTTCAAGTACTTTTTGCAGGGAATGGGCTACATCCCGTATGTGCAGCTCAGTCACCTCAGCAGCGA
GTCAGTACCATCTGCCAGCATGACCCGGCTCGCCCGATCACGAACCCACTCCACCTCAAGTAGCATTGGC
TCTGGAGAAAGTCCCTTTAGCAGGTCTGTGACCAGCAATCAGTCAGATGGAACTCAAGAATCCTGTGAGT
CCCCTGATGTCCTGGACAGACACCAGACCATGGAAGTGTCTTGCTAA

Translation (388 aa):
MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETPHGMVHVTIRGLPKGNRPVILTYHDIGLNHKSC
FNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSFPTGYQYPTMDELAEMLPPVLTHLSMKSIIGIGVGAG
AYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSGFTTNIVDIILAHHFGQEELQANLDLIQTYR
LHIAQDINQENLQLFLGSYNGRRDLEIERPILGQNDNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPI
NTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPYVQLSHLSSESVPSASMTRLARSRTHSTSSSIG
SGESPFSRSVTSNQSDGTQESCESPDVLDRHQTMEVSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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