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Report for CCDS26736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26736.1 Public Mus musculus 13 Ccdc125 23 108 98 CCDS HistoryNCBI Gene:76041Re-query CCDS DB by CCDS ID:26736.1Re-query CCDS DB by GeneID:76041See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057325.14 ENSMUSP00000058484.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057325.14Link to Ensembl Protein Viewer:ENSMUSP00000058484.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057325Re-query CCDS DB by Protein ID:ENSMUSP00000058484
Original member Current member NCBI NM_183115.5 NP_898938.4 Accepted alive Link to Nucleotide Sequence:NM_183115.5Link to Protein Sequence:NP_898938.4Re-query CCDS DB by Nucleotide ID:NM_183115Re-query CCDS DB by Protein ID:NP_898938Link to BLAST:NP_898938.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898938.4 500 Q5U465-1 500 100% 0 0

Chromosomal Locations for CCDS 26736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100677914 100678202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100679317 100679375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100681781 100681867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100682767 100682844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100684286 100684371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100687109 100687191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100690319 100690419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100692295 100692402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100693537 100693708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100694370 100694500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100696111 100696419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGAGCAAAGTGCCGAGGTCATCGAGCGAGGCAGAGGACATCTGGGAAACAGAGGATGACATGACCGAAG
GTGACCTAGGCTATGGCCTCGGAAGAAAACCCGGTGGTATTTATGAAGTTCCGTGTTCGATTACATCTAA
GAAAAGGTCAGATGGAAAGAACTCAAGCCCTCCTCCGTTTCCAAGAAAGGGAGAAGAAAGAAGCGAAACC
AGTTTCCAGTATTCCAGGAGGAAGGGCTTTCAAGATACAAGCGCTGAGGGATACCGAGCATCCAGACTGA
GCAGCACAGATTCTAACTCAGAATTGTCGGATGAGCAGTTAAGGCGACGTCTTCATGAAGCCTTAGAGGA
CGTAGAGATTTTAAAAACGGAACTTGAAGCGTCTCAAAGACAACTTGAAGGTAAAGAGGAAGCATTGAAA
ATCCTCCAAAGCATGGCAATGCTTGGCAAAGCCACAAGCCACACACAGACAATGCTTCAAAAAACTATAG
AACAAAAGAGATCTCTGGAGAAGGAAATAAATGCCTTGCAGTGGGAAATGGAATTTGATCAGGATAGATT
TAAAAATATAGAAGAATCTTGGATCCAGAAATGTGACAGGCTAAACTGTGACAATGCAGTCCTCAGAGAG
AATCTGAAGTTGAGAACAGAGGAAATAAAGATGCTAAAGTCTAAGAATGCTGTTTTGAATCAGCGGTACT
TGGAGGCCCTCGCCATGCTTGATATCAAGGAGCAGAAGATGGGTCAGGAGGAGAGTGGCTTTACAGATGT
ATCAGGTCTCGAGCTTGCAGTCCTTGGAGCCTGCCTGTGTCATGGTCCTGGAGGGAGCCCCTGTTCTTGT
GCCAAAATGGCAGCATCCACTCGGAAACTGGTTCTTCAGCTCAGACATGAGTTGGAAACTCTGCAGAAGA
GTAAGGAAGAGGCGCACATAACGGCAGATGCATTCAGGATTGCTTTTGAGCAACAGTTAATGAGGAAAAA
TGAGCAGGCACTGAGACTGGCTGGAGGGGACCTGTGTAAAAGAGCGGCAACGTGGATCAACAGACAACAC
CAGGCAGACGATGGATATCCGGCACAAAGGAGAAAGAAGACCTTAGGGCAAAGATTACTGGGGATACTCC
CTTCGGAAAACAGCTCCAAGGGCGCTGAAGACCAAGACAATATGCAAGAGGTCTTTAAGATGCTGGTAGA
TTTGTTGAATGACAAAGAAGAAGCCCTTGCACATCAGAGAAAGGTTAGTTACATGCTCGCTCGGGCGCTG
GAAGACAAAGACACGGCCTCAGAAAGGAATAAAGAAAAAATCCCCATGAGCCAGACCTTCCCATTCAAAA
CGGCCTGGCACGACGCTTCAGAGCTCTGTGGTCTGCGTGATCCAGTACAGTCAAACCATGTTTCTGAACC
CATGGCTTGCATCTGTTCAATACAGCATCCTCCAAAAGTTTCAGACTGCCCAAGAACTCTTAAAAGATCC
TGTTCTTTGCCATCAACTTTATTTTACAAGTAA

Translation (500 aa):
MSKVPRSSSEAEDIWETEDDMTEGDLGYGLGRKPGGIYEVPCSITSKKRSDGKNSSPPPFPRKGEERSET
SFQYSRRKGFQDTSAEGYRASRLSSTDSNSELSDEQLRRRLHEALEDVEILKTELEASQRQLEGKEEALK
ILQSMAMLGKATSHTQTMLQKTIEQKRSLEKEINALQWEMEFDQDRFKNIEESWIQKCDRLNCDNAVLRE
NLKLRTEEIKMLKSKNAVLNQRYLEALAMLDIKEQKMGQEESGFTDVSGLELAVLGACLCHGPGGSPCSC
AKMAASTRKLVLQLRHELETLQKSKEEAHITADAFRIAFEQQLMRKNEQALRLAGGDLCKRAATWINRQH
QADDGYPAQRRKKTLGQRLLGILPSENSSKGAEDQDNMQEVFKMLVDLLNDKEEALAHQRKVSYMLARAL
EDKDTASERNKEKIPMSQTFPFKTAWHDASELCGLRDPVQSNHVSEPMACICSIQHPPKVSDCPRTLKRS
CSLPSTLFYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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