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Report for CCDS25436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25436.1 Public Mus musculus 11 Hcrt 23 108 98 CCDS HistoryNCBI Gene:15171Re-query CCDS DB by CCDS ID:25436.1Re-query CCDS DB by GeneID:15171See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055083.3 ENSMUSP00000057578.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055083.3Link to Ensembl Protein Viewer:ENSMUSP00000057578.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055083Re-query CCDS DB by Protein ID:ENSMUSP00000057578
Original member Current member NCBI NM_010410.2 NP_034540.1 Accepted alive Link to Nucleotide Sequence:NM_010410.2Link to Protein Sequence:NP_034540.1Re-query CCDS DB by Nucleotide ID:NM_010410Re-query CCDS DB by Protein ID:NP_034540Link to BLAST:NP_034540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034540.1 130 O55241 130 100% 0 0

Chromosomal Locations for CCDS 25436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100761794 100762165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100762821 100762841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGAACTTTCCTTCTACAAAGGTTCCCTGGGCCGCCGTGACGCTGCTGCTGCTGCTACTGCTGCCGCCGG
CGCTGCTGTCGCTTGGGGTGGACGCACAGCCTCTGCCCGACTGCTGTCGCCAGAAGACGTGTTCCTGCCG
TCTCTACGAACTGTTGCACGGAGCTGGCAACCACGCTGCGGGTATCCTGACTCTGGGAAAGCGGCGGCCT
GGACCTCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCC
TGACCATGGGCCGCCGCGCAGGCGCAGAGCTAGAGCCACATCCCTGCTCTGGTCGCGGCTGTCCGACCGT
AACTACCACCGCTTTAGCACCCCGGGGAGGGTCCGGAGTCTGA

Translation (130 aa):
MNFPSTKVPWAAVTLLLLLLLPPALLSLGVDAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRP
GPPGLQGRLQRLLQANGNHAAGILTMGRRAGAELEPHPCSGRGCPTVTTTALAPRGGSGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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