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Report for CCDS15015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15015.1 Public Mus musculus 1 D630023F18Rik 23 108 98 CCDS HistoryNCBI Gene:98303Re-query CCDS DB by CCDS ID:15015.1Re-query CCDS DB by GeneID:98303See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050047.3 ENSMUSP00000056196.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050047.3Link to Ensembl Protein Viewer:ENSMUSP00000056196.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000050047Re-query CCDS DB by Protein ID:ENSMUSP00000056196
Original member Current member NCBI NM_175293.4 NP_780502.1 Accepted alive Link to Nucleotide Sequence:NM_175293.4Link to Protein Sequence:NP_780502.1Re-query CCDS DB by Nucleotide ID:NM_175293Re-query CCDS DB by Protein ID:NP_780502Link to BLAST:NP_780502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780502.1 231 Q8C3M9 231 100% 0 0

Chromosomal Locations for CCDS 15015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 65108697 65108805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65109462 65109576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65109877 65109964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65116681 65116752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65117122 65117209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65119539 65119621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65121339 65121438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65123053 65123093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGAAAGGAGGCTTGTGAAGCAGGAGGTGAAAAGGCTGCTGGGAGAGTATATCGGAATCAGACTTCGGG
AAAATGAATTTGATCCTAAAGGAAGAGGCCAACTCACCTTTCTAGATGATATGGTAAACCAAGTCACGCT
GGCCCACTATGACTTGGCCATCAGTGTTGCCAGTCAATGGCTAGATTGCTCAGAAAACTTAACTTGGCTC
CAGTGGGAGAAAGTGAGAGCACCACTTCATGTCAGACCTGCGTATCCAAACCGAAAAGAGCGAGAAGCAA
TGATCTTATCATCATACGCTGGAGTCTTAATGAACAGTATTCCAATTGAAGAAGTCCTTAAAATTTATGG
GGCCAATTCTTCTGCCAGTCCTGATTCTACCAAGGTCGCCCAGGCCCTGCTGCCCCGCCGCTCCTTGCAT
CCTTTTGCCATGTTGACCGCACCCAGAGCAGCAGAGTGCAACCGGAGACAGAGTGTCAAGTTGAGAAGAG
GCGCAACGAATAAAAATACCACCAGCAGTTCTACAAAGAAAGCAACAGGGCAGAATGGAGATCCTGTCGG
GAAAGGCACCCACACCCCAGCAACAAACATCTCTCCAACTCCTGTCCTTTCATCTGCCCAGCCCTTCCAC
TCCTCAACTGTTATGTGGAGGAATTTAGAATCAGCACAGAGACAGATGGGACTGGAGGGAAAGTAG

Translation (231 aa):
MERRLVKQEVKRLLGEYIGIRLRENEFDPKGRGQLTFLDDMVNQVTLAHYDLAISVASQWLDCSENLTWL
QWEKVRAPLHVRPAYPNRKEREAMILSSYAGVLMNSIPIEEVLKIYGANSSASPDSTKVAQALLPRRSLH
PFAMLTAPRAAECNRRQSVKLRRGATNKNTTSSSTKKATGQNGDPVGKGTHTPATNISPTPVLSSAQPFH
SSTVMWRNLESAQRQMGLEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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