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Report for CCDS24394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24394.1 Public Mus musculus 11 Rasl10a 23 108 98 CCDS HistoryNCBI Gene:75668Re-query CCDS DB by CCDS ID:24394.1Re-query CCDS DB by GeneID:75668See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037218.1 ENSMUSP00000048453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037218.1Link to Ensembl Protein Viewer:ENSMUSP00000048453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000037218Re-query CCDS DB by Protein ID:ENSMUSP00000048453
Original member Current member NCBI NM_145216.4 NP_660251.1 Accepted alive Link to Nucleotide Sequence:NM_145216.4Link to Protein Sequence:NP_660251.1Re-query CCDS DB by Nucleotide ID:NM_145216Re-query CCDS DB by Protein ID:NP_660251Link to BLAST:NP_660251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660251.1 203 Q8K5A4 203 100% 0 0

Chromosomal Locations for CCDS 24394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5058306 5058524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5059433 5059557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5059798 5060065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGGCGGCAGCCTGCGGGTGGCTGTTCTGGGTGCTCCGGGAGTGGGTAAGACCGCCATCATCCGCCAAT
TCTTGTTTGGTGACTATCCTGAGCGCCACCGACCCACGGACAGTCCCTGCCTCTACCGACCCGCGGTGCT
GCTCGACGGCGCGGTCTACGACCTGAGTATCCGCGATGGTGACGTCGCTGGACCCGGCTCAAGCCCCAGA
AGTCTTGAGGAGTGGCCGGACCCTAAAGACTGGAGCTTGCAGGACACAGACGCCTTTGTGCTGGTCTACG
ACATCTGCAGCCCCGACAGTTTCGATTATGTTAAAGCCCTGAGGCAGCGTATAGCAGAAAACAGGCCGGC
GGGAGCACCAGAGGCACCCATCCTGGTGGTAGGCAACAAGCGGGACCGTCAGCGGCTGCGCTTCGGACCT
CGCCGTGCACTGGCCACTCTAGTTCGTAGGGGCTGGCGCTGTGGCTACCTCGAGTGCTCAGCCAAATACA
ATTGGCACGTGCTGCGTCTCTTCCGAGAGCTTCTGCGTTGTGCTTTGGTGCGCACACGTCCTGCACATCC
GACCCTCCGCCTGCAGGGGGCGCTGCACCCAGCGCGCTGCAGCCTCATGTGA

Translation (203 aa):
MGGSLRVAVLGAPGVGKTAIIRQFLFGDYPERHRPTDSPCLYRPAVLLDGAVYDLSIRDGDVAGPGSSPR
SLEEWPDPKDWSLQDTDAFVLVYDICSPDSFDYVKALRQRIAENRPAGAPEAPILVVGNKRDRQRLRFGP
RRALATLVRRGWRCGYLECSAKYNWHVLRLFRELLRCALVRTRPAHPTLRLQGALHPARCSLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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