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Report for CCDS49294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49294.1 Public Mus musculus 13 Nlrp4f 23 108 98 CCDS HistoryNCBI Gene:97895Re-query CCDS DB by CCDS ID:49294.1Re-query CCDS DB by GeneID:97895See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037372.7 ENSMUSP00000041908.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037372.7Link to Ensembl Protein Viewer:ENSMUSP00000041908.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037372Re-query CCDS DB by Protein ID:ENSMUSP00000041908
Original member Current member EBI ENSMUST00000221659.1 ENSMUSP00000152151.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221659.1Link to Ensembl Protein Viewer:ENSMUSP00000152151.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221659Re-query CCDS DB by Protein ID:ENSMUSP00000152151
Original member Current member NCBI NM_175290.4 NP_780499.3 Accepted alive Link to Nucleotide Sequence:NM_175290.4Link to Protein Sequence:NP_780499.3Re-query CCDS DB by Nucleotide ID:NM_175290Re-query CCDS DB by Protein ID:NP_780499Link to BLAST:NP_780499.3

Chromosomal Locations for CCDS 49294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 65181564 65181702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65182903 65183073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65184963 65185133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65187441 65187608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65190225 65190386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65190819 65190977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65193986 65195555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65199169 65199442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2814 nt):
ATGGCATCTTTCATTTCAGATTTTGGCCTTATATGGTATTTGAGAGAACTAAATAAGAAGGAATTCATGA
AGTTTAAGGACTTTCTCATACAGGAGATTCTGGAATTGAAACTGAAACAGGTATCTTCGACCAAAGTGAA
GAAAGCATCTCGGGAAGATCTTGCCAACTTACTTCTGAAATGTGGGGAGAATCAAGCCTGGGATATGACC
TTCAGAATCCTCCAGAAGATCAATAGGAAAGATCTCACTGAGAGGGCAACAGGAGCGATTGTTGGAAACC
CAAATTTATATCGAGATCATTTGAAGAAAAAACTGACCCATGATTGTCCCAAAAAATTTAACGTCCGTAT
TCAAGATTTCATTAAAGAGACTTTCATTCAAAATGACTATGATGCTTTTGAGAACCTTCTCATCTCAAAG
GGAACTGAAAGGAAGCCACACATGGTGTTCCTGAAAGGCATGGCTGGAGTTGGCAAGACACTGATGTTGA
AAAATTTAATGCTGGCCTGGTCAAAAGGCCTGGTGTTTCAAAACAAATTCTCTTACGCTTTCTACTTCTG
CTGTCAAGATGTGAAGCAGTTGAAGACAGCCAGCCTTGCTGAACTTATCTCCAGAGAGTGGCCCAGCCCC
TCGGCTCCTATAGAGGAGATCCTATCCCAACCCGAGAAACTCTTATTTATCATTGACAGCTTGGAAGGGA
TGGAATGGGATTTAACCAAACAGGAATCAGAGCTGTGTGATGACTGCATGGAGAAGCAGCCAGTGAGTAC
ACTGCTGAGCAGTTTGCTCAGGAGGAAGATGCTCCCTGAATCCTCTCTCCTCCTCTCCACTACCCCAGAG
ACTTTTGAGAAAATGGAGGACAGGATTCAGTGCACAGATGTGAAGACAGCAACTGCATTTGATGAGAGGA
GTATGAAGATATATTTCCACAGATTGTTCCAAGATAGGAAGAGAGCCCAGGAGGCCTTCAGTTTGGTGAG
AGAAAACAAGCAGCTGTTCACTATATGTCAGGTCCCTCTGCTCTGCTGGATGGTGGCTACTTGTCTAAAA
GAGGAGATAGAGAAGGGAGGAGACCCAGTCTCCCTCTGCCGACGTACCACCTCCCTATATACCACTCACA
TCTTCAGTTTGTTCATTCCCCAAAGTGCCCAGTATCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGGCTT
ATGTTCTCTAGCTGCTGAGGGCATGTGGACTGACACATTTGTGTTTGGCAAGGAGGCTCTCAGGAGAAAT
GGGATCTTTGACTCTGACATCCCCACACTTTTGGACATTGGAATGCTTGGAAAGATCAGAGAATTTGAGA
ATTCTTACATATTCCTCCACCCATCTGTTCAGGAGGTCTGTGCTGCCATCTTTTATATGCTAAAGAGGCA
TGTGGAACACCCTAGCCAGGATGTTAAAAATATAGAGACAGTCTTGTTTATGTTTTTAAAGAAAGTAAAA
ACACAGTGGATTTTTTTGGGCTGTTTCATCTTTGGTCTTTTACAGAAATCAGAACAAGAAAAGCTAGGGG
TATTTTTTGGCCACCGGTTGTCCAAGAACATACACCATAAGTTATATCAGTGCCTGGAAACCTTAAGTGG
CAATGCAGAGCTTCAAGAACAAATAGACGGCATGAGATTGTTTTCCTGTCTGTTTGAGATGGAAGATGAA
GCCTTCCTAGTAAAAGCAATGAATTGTATGCAACAGATTAACTTTGTGGCTAAGAATTATTCTGATTTTA
TTGTTGCTGCTTATTGCTTGAAACACTGTTCTACACTGAAGAAACTATCCTTTTCAACTGAAAATGTCCT
GAATGAAGGAGACCAGAGTTATATGGAAGAGCTACTTATCTGTTGGAATAATATGTGCTCTGTGTTTGTA
AGGAGTAAAGACATTCAGGAACTCCGAATAAAAGACACTAATTTCAATGAGCCAGCCATTCGAGTTTTAT
ATGAATCTCTGAAGTACCCCAGCTTCACCCTTAACAAACTTGTGGCAAATAATGTGTCCTTTGGTGATAA
CCACGTGCTCTTTGAGTTGATTCAGAATTCCAGTTTGCAATACTTGGACCTCAGCTGCTCATTTCTGTCC
CACAATGAGGTGAAACTGTTGTGTGATATCTTGAACCAGGCAGAGTGCAACATAGAAAAACTTATGATAG
CACACTGTAAACTTTCACCTGATGACTGCAAGATCTTTGGCTCCATCCTGATGAGCAGCAAGTCGTTGAA
GGTTCTTAATTTGGCATCCAACAATTTGAATCAAGGAATATCCTCACTGTGCAAGGCTTTGTGCCACCCA
CACTGTACTCTGGAGTACTTAGTGCTGTCCAACTGTTCCCTCAGTGAGCAATGTTGGGACTACCTTTCTG
AAGTTCTTAGGCAGAACAAAACTCTGAGCCATCTAGACATCAGCTCCAATGACCTGAAGGATGAAGGACT
GAAGATTCTCTGTAGGTCTCTGATTCTCCCATACTGTGTCCTGGAGTCACTATGTTTGAGCTGTTGTGGA
ATCACCGAAAGGGGCTGCCAGGATCTGGCTGAAGTCCTGAAGAACAACCAGAACCTGAAGTACCTACATG
TTTCATACAATAAGCTAAAAGACACTGGTGTGATGCTGCTGTGTGATGCTATAAAACATCCTAACTGCCA
CTTAAAGGATCTACAGTTGGAAGCCTGTGAAATAACTGATGCCAGTAATGAGGAGCTTTGTTATGCTTTT
ATGCAGTGTGAGACCCTGCAGACGCTCAACCTCATGGGGAATGCCTTCGAAGTCAGTAGAATGGTTTTCT
TTCCCAGGTTCTGA

Translation (937 aa):
MASFISDFGLIWYLRELNKKEFMKFKDFLIQEILELKLKQVSSTKVKKASREDLANLLLKCGENQAWDMT
FRILQKINRKDLTERATGAIVGNPNLYRDHLKKKLTHDCPKKFNVRIQDFIKETFIQNDYDAFENLLISK
GTERKPHMVFLKGMAGVGKTLMLKNLMLAWSKGLVFQNKFSYAFYFCCQDVKQLKTASLAELISREWPSP
SAPIEEILSQPEKLLFIIDSLEGMEWDLTKQESELCDDCMEKQPVSTLLSSLLRRKMLPESSLLLSTTPE
TFEKMEDRIQCTDVKTATAFDERSMKIYFHRLFQDRKRAQEAFSLVRENKQLFTICQVPLLCWMVATCLK
EEIEKGGDPVSLCRRTTSLYTTHIFSLFIPQSAQYPSKKSQDQLQGLCSLAAEGMWTDTFVFGKEALRRN
GIFDSDIPTLLDIGMLGKIREFENSYIFLHPSVQEVCAAIFYMLKRHVEHPSQDVKNIETVLFMFLKKVK
TQWIFLGCFIFGLLQKSEQEKLGVFFGHRLSKNIHHKLYQCLETLSGNAELQEQIDGMRLFSCLFEMEDE
AFLVKAMNCMQQINFVAKNYSDFIVAAYCLKHCSTLKKLSFSTENVLNEGDQSYMEELLICWNNMCSVFV
RSKDIQELRIKDTNFNEPAIRVLYESLKYPSFTLNKLVANNVSFGDNHVLFELIQNSSLQYLDLSCSFLS
HNEVKLLCDILNQAECNIEKLMIAHCKLSPDDCKIFGSILMSSKSLKVLNLASNNLNQGISSLCKALCHP
HCTLEYLVLSNCSLSEQCWDYLSEVLRQNKTLSHLDISSNDLKDEGLKILCRSLILPYCVLESLCLSCCG
ITERGCQDLAEVLKNNQNLKYLHVSYNKLKDTGVMLLCDAIKHPNCHLKDLQLEACEITDASNEELCYAF
MQCETLQTLNLMGNAFEVSRMVFFPRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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