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Report for CCDS15322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15322.1 Public Mus musculus 1 Pkp1 23 108 98 CCDS HistoryNCBI Gene:18772Re-query CCDS DB by CCDS ID:15322.1Re-query CCDS DB by GeneID:18772See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027667.12 ENSMUSP00000027667.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027667.12Link to Ensembl Protein Viewer:ENSMUSP00000027667.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027667Re-query CCDS DB by Protein ID:ENSMUSP00000027667
Original member Current member EBI ENSMUST00000163260.7 ENSMUSP00000128418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163260.7Link to Ensembl Protein Viewer:ENSMUSP00000128418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163260Re-query CCDS DB by Protein ID:ENSMUSP00000128418
Original member Current member NCBI NM_001313701.1 NP_001300630.1 Accepted alive Link to Nucleotide Sequence:NM_001313701.1Link to Protein Sequence:NP_001300630.1Re-query CCDS DB by Nucleotide ID:NM_001313701Re-query CCDS DB by Protein ID:NP_001300630Link to BLAST:NP_001300630.1
Original member Current member NCBI NM_019645.3 NP_062619.1 Accepted alive Link to Nucleotide Sequence:NM_019645.3Link to Protein Sequence:NP_062619.1Re-query CCDS DB by Nucleotide ID:NM_019645Re-query CCDS DB by Protein ID:NP_062619Link to BLAST:NP_062619.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300630.1 728 P97350 728 100% 0 0
NP_062619.1 728 P97350 728 100% 0 0

Chromosomal Locations for CCDS 15322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 135875630 135875704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135877071 135877158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135877673 135877859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135878122 135878275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135879846 135880022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135880722 135880877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135882481 135882595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135883897 135884074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135884905 135885112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135886733 135886877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135889692 135890086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135908876 135908982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135918811 135919012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGAACCACTCTCCGCTCAAGACCGCGCTGGCGTACGAATGCTTCCAGGACCAGGACAACTCCACGCTGG
CTTTGCCCTCTGACCAAAAGATGAAGACCGGCACGTCGGGCAGGCAGCGCGTGCAGGAGCAAGTGATGAT
GACCGTCAAACGGCAGAAGTCCAAGTCTTCCCAGTCGTCCACCTTGAGTCACTCCAACCGAGGTTCCATG
TATGATGGGCTGGCTGACAATTACAACAACTACGGCACCACGAGCAGAAGCAGCTACTTCTCCAAGTTCC
AGGCAGGGAATGGCTCGTGGGGATATCCGATCTACAATGGGACCCTCAAGCGGGAGCCCGACAACAGACG
CTTCAGCTCCTATAGCCAGATGGAGAACTGGAGCCGGCACTATCCCCGAGGCAGCTGTGCCACCCCGGGC
GCTGGCAGTGACATCTGCTTCATGCAGAAAATCAAGGCAAGCCGCAGTGAGCCTGACCTCTACTGTGACC
CAAGGGGCACACTGCGCAAGGGCACCCTGGGCAGCAAGGGCCACAAGACCACCCAGAACCGATGCAGCTT
CTACAGCACTTGCAGTGGTCAGAAGGCTGTCAAGAAGTGTCCCGTGCGGCCGCCCTCCTGCACCTCCAAG
CAAGACCCGGTGTATGTGCCGCCTATCTCCTGCAACAAGGACCTGTCCTTCGGCCACTCGAGGGCCAGTT
CCAAGATCTGCAGTGAGGACATTGAGTGTAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTGTGCTC
CCAGGATGAGAAGTACCAGGCCATCGGAGCCTATTACATCCAGCACACCTGCTTCCAGGATGAATCTGCC
AAGCAACAGGTCTATCAGCTGGGGGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAATCAGAATG
TCCAGCAGGCTGCTGCCGGGGCCCTGCGCAACCTGGTGTTCAGGAGCACCCCCAACAAGCTGGAGACCAG
GAGGCAGAACGGAATCCGTGAAGCTGTCAGCCTCCTGAGGAGAAGCGGGAGCACGGAGATCCAAAAACAG
CTGACTGGGCTCCTCTGGAACCTGTCTTCCACTGATGAGCTGAAGGAGGAGCTGGTGGCCGACGCCCTGC
CTGTTCTGACTGACCGGGTCATCATTCCTTTCTCTGGCTGGTGTGATGGTAACAGCAACATGTCCCGGGA
AGTAGTGGACCCTGAGGTCTTCTTCAATGCTACAGGCTGCTTGAGGAACCTGAGTTCAGCTGATGCTGGC
CGCCAGACTATGCGGAACTACTCTGGGCTCATTGACTCCCTCATGGCCTATGTCCAGAACTGCGTGGCTG
CCAGCCGCTGCGATGACAAGTCTGTGGAGAACTGCATGTGTATCCTGCATAACCTCTCCTACCGCCTGGA
CGCCGAGGTGCCCACCCGCTACCGCCAGCTGGAGTACAATACCCGCAATGCCTACACCGAGAAGTCCTCC
ACTGGCTGCTTCAGCAACAGGGGTGACAAGATGATGAACAATAACTATGACTGCCCACTTCCGGAGGAAG
AGACCAACCCCAAGGGCAGCAGCTGGCTGTACCACTCAGATGCCATCCGGACCTACCTGAACCTCATGGG
AAAGAGCAAGAAAGATGCTACCTTGGAGGCCTGTGCTGGGGCCCTGCAAAACCTGACAGCCAGCAAGGGG
CTGATGTCCAATGGTATGAGTCAGTTAATTGGAATAAAGGAAAAGGGCCTGCCACAAATCGCCCGTCTCC
TGCAATCTGGCAATTCGGATGTGGTGCGGTCCGGAGCCTCTCTGCTGAGCAACATGTCTCGCCACCCTGT
GCTGCACAGAGTGATGGGAAACCAGGTGTTCCCAGAGGTAACCAGACTCCTCACTAGCCACACCGGCAAT
ACCAGCAACTCTGAAGATATCTTGTCCTCAGCCTGCTACACTGTGAGGAACCTGATGACCTCACAGCCTC
AGATGGCCAAGCAGTACTTCTCCAACAGCATGCTCAACAATGTCTTCAACTTGTGCCGCAACACTGCCTC
CTCACCTAAGGCTGCAGAGGCTGCCCGGCTACTCCTGTCTGACATGTGGGCCAGCAAGGAGCTGCAGAGT
GTCCTCAGGCAGCAAGGTTTCGATAGGAATATGATGGGAAACATAGCTGGGGCCAACAACCTCAGAAACT
TCACCTCCCGGTTCTAA

Translation (728 aa):
MNHSPLKTALAYECFQDQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSM
YDGLADNYNNYGTTSRSSYFSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGSCATPG
AGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGHKTTQNRCSFYSTCSGQKAVKKCPVRPPSCTSK
QDPVYVPPISCNKDLSFGHSRASSKICSEDIECSGLTIPKAVQYLCSQDEKYQAIGAYYIQHTCFQDESA
KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTPNKLETRRQNGIREAVSLLRRSGSTEIQKQ
LTGLLWNLSSTDELKEELVADALPVLTDRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG
RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCILHNLSYRLDAEVPTRYRQLEYNTRNAYTEKSS
TGCFSNRGDKMMNNNYDCPLPEEETNPKGSSWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG
LMSNGMSQLIGIKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPVLHRVMGNQVFPEVTRLLTSHTGN
TSNSEDILSSACYTVRNLMTSQPQMAKQYFSNSMLNNVFNLCRNTASSPKAAEAARLLLSDMWASKELQS
VLRQQGFDRNMMGNIAGANNLRNFTSRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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