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Report for CCDS28391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28391.1 Public Mus musculus 17 Slc22a3 23 108 98 CCDS HistoryNCBI Gene:20519Re-query CCDS DB by CCDS ID:28391.1Re-query CCDS DB by GeneID:20519See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024595.3 ENSMUSP00000024595.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024595.3Link to Ensembl Protein Viewer:ENSMUSP00000024595.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000024595Re-query CCDS DB by Protein ID:ENSMUSP00000024595
Original member Current member NCBI NM_011395.2 NP_035525.1 Accepted alive Link to Nucleotide Sequence:NM_011395.2Link to Protein Sequence:NP_035525.1Re-query CCDS DB by Nucleotide ID:NM_011395Re-query CCDS DB by Protein ID:NP_035525Link to BLAST:NP_035525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035525.1 551 Q9WTW5 551 100% 0 0

Chromosomal Locations for CCDS 28391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12421437 12421497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12423734 12423833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12425602 12425714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12426671 12426779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12433463 12433677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12433798 12433895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12457545 12457662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12458438 12458606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12459763 12459917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12464457 12464560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12506911 12507324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGCCCACGTTCGACCAGGCACTGAGGAAGGCGGGCGAGTTCGGGCGCTTCCAGCGGCGCGTGTTCCTGC
TGCTGTGCCTGACGGGTGTCACCTTCGCCTTCCTCTTCGTCGGTGTGGTCTTCCTGGGCAGCCAGCCCGA
CTACTATTGGTGTCGCGGGCCGCGCGCCACCGCGCTGGCCGAGCGCTGCGCCTGGAGCCCCGAGGAGGAG
TGGAACCTCACCACACCGGAGCTCCACGTCCCAGCTGAGCGCCGCGGCCAAGGCCACTGCCACCGCTACC
TGCTGGAAGCCACTAATACCAGCTCAGAGCTCAGCTGCGACCCACTCACTGCCTTCCCCAACCGCTCCGC
GCCTCTGGTGTCCTGCAGCGGTGACTGGCGCTATGTGGAGACCCACTCTACCATCGTCAGCCAGTTTGAC
CTTGTCTGCAGCAATGCCTGGATGTTGGACCTCACCCAAGCCATCCTGAACCTTGGCTTCCTGGCTGGGG
CTTTTACCTTGGGCTATGCAGCGGACAGATATGGCAGGCTCATCATTTACTTAATATCCTGTTTCGGCGT
TGGCATCACAGGAGTCGTGGTGGCATTTGCGCCAAATTTTTCTGTGTTTGTGATTTTCCGCTTCCTACAA
GGAGTGTTTGGAAAGGGGGCCTGGATGACTTGCTTCGTGATCGTGACAGAAATAGTTGGTTCAAAACAAA
GGAGGATTGTGGGAATCGTGATCCAGATGTTCTTCACCCTCGGGATCATTATTCTTCCTGGGATTGCCTA
CTTCACGCCCAGCTGGCAGGGCATCCAGCTAGCCATCTCTCTGCCCAGCTTTCTCTTCCTCCTCTATTAC
TGGGTGGTCCCTGAGTCTCCCCGCTGGCTGATCACCCGGAAGCAAGGAGAGAAAGCCTTGCAGATCCTGA
GGCGCGTGGCTAAGTGCAATGGAAAACACCTCTCATCAAATTACTCAGAGATCACAGTTACAGATGAAGA
AGTCAGTAACCCATCCTGTTTAGACCTTGTGAGAACTCCCCAAATGAGGAAATGCACGCTCATCCTTATG
TTTGCTTGGTTCACGAGCGCCGTGGTGTACCAAGGACTTGTCATGCGCCTGGGACTTATCGGAGGCAACC
TCTACATAGACTTCTTTATCTCTGGGCTCGTGGAGCTGCCCGGAGCTCTCTTAATCCTTCTGACCATTGA
GCGCCTTGGACGACGCCTTCCCTTTGCGGCAAGCAATATAGTGGCAGGGGTGTCGTGTCTGGTCACTGCA
TTTTTACCAGAAGGGATACCGTGGCTGAGGACCACAGTCGCTACCCTGGGAAGACTAGGAATAACCATGG
CCTTCGAAATTGTTTATTTGGTAAATTCAGAGTTGTACCCAACGACATTACGGAACTTTGGGGTTTCACT
CTGCTCAGGCTTGTGTGACTTTGGGGGGATTATAGCCCCGTTTCTGCTCTTTCGGCTGGCAGCTATATGG
TTAGAACTGCCTCTGATCATCTTTGGGATCCTGGCGTCTGTCTGTGGTGGCCTCGTGATGCTTTTGCCTG
AAACGAAGGGCATTGCCTTGCCGGAGACGGTGGAAGACGTAGAAAAGCTTGGCAGTTCACAGTTGCATCA
GTGTGGCAGAAAAAAGAAAACCCAGGTTTCTACTTCTGATGTCTGA

Translation (551 aa):
MPTFDQALRKAGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGSQPDYYWCRGPRATALAERCAWSPEEE
WNLTTPELHVPAERRGQGHCHRYLLEATNTSSELSCDPLTAFPNRSAPLVSCSGDWRYVETHSTIVSQFD
LVCSNAWMLDLTQAILNLGFLAGAFTLGYAADRYGRLIIYLISCFGVGITGVVVAFAPNFSVFVIFRFLQ
GVFGKGAWMTCFVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFTPSWQGIQLAISLPSFLFLLYY
WVVPESPRWLITRKQGEKALQILRRVAKCNGKHLSSNYSEITVTDEEVSNPSCLDLVRTPQMRKCTLILM
FAWFTSAVVYQGLVMRLGLIGGNLYIDFFISGLVELPGALLILLTIERLGRRLPFAASNIVAGVSCLVTA
FLPEGIPWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFRLAAIW
LELPLIIFGILASVCGGLVMLLPETKGIALPETVEDVEKLGSSQLHQCGRKKKTQVSTSDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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