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Report for CCDS17676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17676.1 Public Mus musculus 3 Man1a2 23 108 98 CCDS HistoryNCBI Gene:17156Re-query CCDS DB by CCDS ID:17676.1Re-query CCDS DB by GeneID:17156See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008907.13 ENSMUSP00000008907.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008907.13Link to Ensembl Protein Viewer:ENSMUSP00000008907.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000008907Re-query CCDS DB by Protein ID:ENSMUSP00000008907
Original member Current member NCBI NM_010763.2 NP_034893.1 Accepted alive Link to Nucleotide Sequence:NM_010763.2Link to Protein Sequence:NP_034893.1Re-query CCDS DB by Nucleotide ID:NM_010763Re-query CCDS DB by Protein ID:NP_034893Link to BLAST:NP_034893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034893.1 641 P39098-1 641 100% 0 0

Chromosomal Locations for CCDS 17676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100567610 100567742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100578476 100578591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100581985 100582157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100587718 100587937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100591833 100591948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100616963 100617056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100620029 100620152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100632504 100632598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100644541 100644621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100646992 100647110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100652539 100652635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100656019 100656274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100684561 100684862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGACTACCCCAGCGCTGCTGCCCCTCTCTGGTCGTAGGATACCACCTTTGAACCTGGGGCCGCCCTCCT
TCCCACATCACAGGGCTACCTTGAGACTCTCCGAGAAGTTTATCCTTCTCCTCATCCTTAGTGCCTTCAT
CACCCTGTGTTTTGGGGCATTCTTCTTCCTTCCAGACTCTTCAAAACACAAACGCTTTGATCTGGGCTTA
GAAGATGTGTTAATTCCTCACGTAGATGCCGGCAAAGGAGCTAAAAACCCCGGCGTCTTCCTGATCCATG
GACCCGACGAACACAGACACAGGGAAGAAGAAGAGCGTCTGAGAAATAAGATTAGAGCTGACCATGAGAA
AGCCCTGGAAGAAGCAAAAGAAAAATTAAGAAAGTCAAGAGAGGAAATCCGTGCAGAAATTCAGACAGAG
AAAAACAAAGTAGCCCAAGCAATGAAGACAAAAGAGACCAGGGTACTGCCGCCTGTCCCTGTCCCACAAC
GTGTAGGGGTCAGTGGTGGGGATCCAGAAGACATGGAGATCAAGAAGAAAAGAGACAAAATTAAAGAGAT
GATGAAACATGCCTGGGATAATTACAGAACATACGGATGGGGACATAATGAACTAAGGCCTATTGCAAGG
AAAGGCCATTCCACTAACATATTCGGAAGCTCACAGATGGGTGCCACCATAGTGGATGCTTTGGATACCC
TTTATATCATGGGGCTTCATGATGAATTCATGGATGGGCAAAGATGGATTGAAGAAAACCTTGATTTCAG
TGTGAATTCAGAAGTGTCTGTCTTTGAAGTTAACATTCGCTTTATTGGAGGGCTCCTCGCTGCATATTAC
CTGTCAGGAGAGGAAATATTCAAGACTAAAGCAGTGCAGTTGGCTGAGAAACTCCTTCCTGCCTTTAACA
CACCTACTGGGATTCCCTGGGCAATGGTGAACCTGAAAAGTGGAGTAGGTCGAAACTGGGGCTGGGCGTC
TGCAGGCAGCAGCATCCTGGCTGAGTTCGGCACCCTGCACATGGAGTTTGTGCACCTCAGCTACTTGACC
GGTGACTTGACTTACTATAATAAGGTCATGCACATTCGGAAACTACTGCAGAAAATGGAACGCCCAAATG
GTCTTTATCCAAATTATTTAAACCCAAGAACAGGGCGCTGGGGTCAGTATCACACATCAGTTGGTGGTCT
GGGAGATAGTTTTTATGAATACTTACTGAAAGCATGGCTGATGTCAGATAAAACAGACCACGAGGCAAGA
AGGATGTATGACGATGCTGTTGAGGCTATAGAAAAACATCTTATTAAGAAGTCCCGAGGAGGTCTGGTTT
TTATTGGAGAATGGAAGAATGGACACTTGGAAAGGAAGATGGGGCACTTGGCCTGCTTTGCTGGGGGAAT
GTTTGCCCTTGGAGCAGATGGTTCCAGAAAGGATAAAGCTGGCCACTACTTAGAACTAGGGGCAGAAATT
GCACGAACATGTCATGAGTCATATGACAGAACTGCATTGAAACTAGGTCCGGAGTCATTCAAGTTTGATG
GTGCAGTGGAAGCCGTGGCTGTGCGGCAGGCTGAAAAGTATTACATCCTTCGTCCAGAAGTAATTGAAAC
CTATTGGTATCTATGGCGATTTACCCACGACCCAAGATACAGGCAGTGGGGCTGGGAAGCAGCACTGGCT
ATTGAGAAGTCGTGCCGGGTCAGCGGTGGGTTTTCTGGTGTCAAGGATGTATACGCCCCGACCCCTGTGC
ATGACGACGTGCAGCAGAGCTTTTTTCTTGCTGAAACATTAAAATACTTGTACCTGCTGTTCTCTGGCGA
TGACCTTCTACCTTTAGACCACTGGGTGTTTAACACAGAGGCGCACCCTCTGCCGGTGTTGCGCTTAGCC
AACAGCACTCTTTCAGGTAATCCTGCTGTCCGATGA

Translation (641 aa):
MTTPALLPLSGRRIPPLNLGPPSFPHHRATLRLSEKFILLLILSAFITLCFGAFFFLPDSSKHKRFDLGL
EDVLIPHVDAGKGAKNPGVFLIHGPDEHRHREEEERLRNKIRADHEKALEEAKEKLRKSREEIRAEIQTE
KNKVAQAMKTKETRVLPPVPVPQRVGVSGGDPEDMEIKKKRDKIKEMMKHAWDNYRTYGWGHNELRPIAR
KGHSTNIFGSSQMGATIVDALDTLYIMGLHDEFMDGQRWIEENLDFSVNSEVSVFEVNIRFIGGLLAAYY
LSGEEIFKTKAVQLAEKLLPAFNTPTGIPWAMVNLKSGVGRNWGWASAGSSILAEFGTLHMEFVHLSYLT
GDLTYYNKVMHIRKLLQKMERPNGLYPNYLNPRTGRWGQYHTSVGGLGDSFYEYLLKAWLMSDKTDHEAR
RMYDDAVEAIEKHLIKKSRGGLVFIGEWKNGHLERKMGHLACFAGGMFALGADGSRKDKAGHYLELGAEI
ARTCHESYDRTALKLGPESFKFDGAVEAVAVRQAEKYYILRPEVIETYWYLWRFTHDPRYRQWGWEAALA
IEKSCRVSGGFSGVKDVYAPTPVHDDVQQSFFLAETLKYLYLLFSGDDLLPLDHWVFNTEAHPLPVLRLA
NSTLSGNPAVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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