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Report for CCDS24287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24287.1 Public Mus musculus 10 Rab5b 23 108 98 CCDS HistoryNCBI Gene:19344Re-query CCDS DB by CCDS ID:24287.1Re-query CCDS DB by GeneID:19344See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000727.3 ENSMUSP00000000727.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000727.3Link to Ensembl Protein Viewer:ENSMUSP00000000727.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000727Re-query CCDS DB by Protein ID:ENSMUSP00000000727
Original member NCBI NM_177411.4 NP_803130.1 Updated not alive Link to Nucleotide Sequence:NM_177411.4Link to Protein Sequence:NP_803130.1Re-query CCDS DB by Nucleotide ID:NM_177411Re-query CCDS DB by Protein ID:NP_803130
Current member NCBI NM_177411.5 NP_803130.1 Accepted alive Link to Nucleotide Sequence:NM_177411.5Link to Protein Sequence:NP_803130.1Re-query CCDS DB by Nucleotide ID:NM_177411Re-query CCDS DB by Protein ID:NP_803130Link to BLAST:NP_803130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803130.1 215 P61021 215 100% 0 0

Chromosomal Locations for CCDS 24287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128679530 128679645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128681386 128681479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128682824 128682946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128683195 128683346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128686748 128686910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGACTAGCAGAAGTACAGCCAGGCCCAATGGGCAACCCCAGGCCAGCAAAATATGCCAGTTCAAATTGG
TCCTGCTGGGAGAGTCTGCAGTGGGGAAGTCTAGCCTGGTGTTACGTTTTGTCAAAGGACAGTTCCATGA
ATACCAGGAAAGCACCATTGGAGCGGCCTTCCTCACCCAATCCGTGTGTTTAGATGACACAACAGTCAAG
TTTGAGATCTGGGACACTGCTGGGCAGGAGCGATACCACAGTTTAGCCCCTATGTACTACAGGGGTGCCC
AGGCTGCAATCGTGGTCTATGATATTACTAATCAGGAAACGTTTGCTCGGGCAAAGACATGGGTAAAGGA
ACTACAGCGGCAAGCCAGCCCTAGCATTGTTATTGCCTTGGCAGGGAACAAAGCTGACCTTGCCAACAAG
CGCATGGTGGAGTATGAAGAGGCTCAGGCATATGCAGATGACAACAGCTTATTATTTATGGAGACTTCAG
CTAAGACTGCTATGAACGTGAATGATCTCTTCCTGGCAATAGCAAAGAAGTTGCCAAAGAGCGAACCCCA
GAATCTGGGGGGTGCGGCAGGCCGAAGTCGGGGTGTGGATCTTCATGAGCAGTCCCAGCAGAACAAGAGC
CAGTGTTGTAGCAACTGA

Translation (215 aa):
MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVK
FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK
RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKS
QCCSN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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