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Report for CCDS82166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82166.1 Public Homo sapiens 17 PCTP 24 110 108 CCDS HistoryNCBI Gene:58488Re-query CCDS DB by CCDS ID:82166.1Re-query CCDS DB by GeneID:58488See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82166.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000573500.5 ENSP00000460437.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000573500.5Link to Ensembl Protein Viewer:ENSP00000460437.1Re-query CCDS DB by Nucleotide ID:ENST00000573500Re-query CCDS DB by Protein ID:ENSP00000460437
Original member Current member NCBI NM_001330378.3 NP_001317307.1 Accepted alive Link to Nucleotide Sequence:NM_001330378.3Link to Protein Sequence:NP_001317307.1Re-query CCDS DB by Nucleotide ID:NM_001330378Re-query CCDS DB by Protein ID:NP_001317307Link to BLAST:NP_001317307.1

Chromosomal Locations for CCDS 82166.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55751104 55751244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55767335 55767452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55771106 55771185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55773724 55773895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55774792 55774859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55822761 55822841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGAGCTGGCCGCCGGAAGCTTCTCGGAGGAGCAGTTCTGGGAGGCCTGCGCCGAGCTCCAGCAGCCCG
CTCTGGCCGGGGCCGACTGGCAGCTCCTAGTGGAGACCTCGGGCATCAGCATCTACCGGCTGCTGGACAA
GAAGACTGGACTTTATGAGTATAAAGTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGCAGAC
ATCTATATGGACTCAGATTACAGAAAACAATGGGACCAGTATGTTAAAGAACTCTATGAACAAGAATGCA
ACGGAGAGACTGTGGTCTACTGGGAAGTGAAGTACCCTTTTCCCATGTCCAACAGAGACTATGTCTACCT
TCGGCAGCGGCGAGACCTGGACATGGAAGGGAGGAAGATCCATGTGATCCTGGCCCGGAGCACCTCCATG
CCTCAGCTTGGCGAGAGGTCTGGGGTGATCCGGGTGAAGCAATACAAGCAGAGCCTGGCGATCGAGAGTG
ACGGCAAGAAGGGGAGCAAAGTTTTCATGTATTACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCT
CATTAACTGGGCCGCCAAGAATCAGAGCAGAACCAAGCGGGAAGCTCAGAATCAGAGAGACCTCATCAAG
TTTTTGGCAAACCCAAACATTCTGCAATAG

Translation (219 aa):
MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLAD
IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSM
PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNQSRTKREAQNQRDLIK
FLANPNILQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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