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Report for CCDS11520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11520.1 Public Homo sapiens 17 SP6 24 110 108 CCDS HistoryNCBI Gene:80320Re-query CCDS DB by CCDS ID:11520.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342234.3 ENSP00000340799.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342234.3Link to Ensembl Protein Viewer:ENSP00000340799.2Re-query CCDS DB by Nucleotide ID:ENST00000342234Re-query CCDS DB by Protein ID:ENSP00000340799
Original member Current member EBI ENST00000536300.2 ENSP00000438209.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000536300.2Link to Ensembl Protein Viewer:ENSP00000438209.1Re-query CCDS DB by Nucleotide ID:ENST00000536300Re-query CCDS DB by Protein ID:ENSP00000438209
Original member Current member NCBI NM_001258248.2 NP_001245177.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258248.2Link to Protein Sequence:NP_001245177.1Re-query CCDS DB by Nucleotide ID:NM_001258248Re-query CCDS DB by Protein ID:NP_001245177Link to BLAST:NP_001245177.1
Original member Current member NCBI NM_199262.3 NP_954871.1 Accepted alive Link to Nucleotide Sequence:NM_199262.3Link to Protein Sequence:NP_954871.1Re-query CCDS DB by Nucleotide ID:NM_199262Re-query CCDS DB by Protein ID:NP_954871Link to BLAST:NP_954871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245177.1 376 Q3SY56 376 100% 0 0
NP_954871.1 376 Q3SY56 376 100% 0 0

Chromosomal Locations for CCDS 11520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47847299 47848429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGCTAACCGCTGTCTGCGGCTCTCTGGGCAGCCAGCACACGGAAGCGCCGCACGCCTCCCCGCCGCGCC
TCGACCTGCAGCCTCTCCAAACTTACCAGGGCCACACGAGCCCTGAGGCCGGGGACTACCCCTCCCCGCT
GCAGCCTGGAGAGCTGCAGAGCCTCCCGCTGGGCCCGGAGGTGGACTTCTCGCAGGGCTATGAGCTGCCA
GGGGCCTCCTCGCGGGTAACCTGCGAGGACCTGGAAAGCGACAGTCCCTTGGCCCCGGGCCCCTTTTCCA
AGCTCCTGCAGCCGGACATGTCACACCATTATGAATCGTGGTTCAGGCCGACTCACCCAGGCGCGGAGGA
TGGCTCGTGGTGGGACCTTCATCCGGGCACCAGCTGGATGGACCTCCCCCACACTCAGGGCGCGCTGACC
TCACCTGGCCACCCGGGGGCGCTTCAGGCGGGCTTGGGGGGCTACGTCGGAGACCACCAGCTTTGTGCCC
CGCCACCCCACCCGCATGCGCACCACCTCCTTCCAGCTGCCGGAGGGCAGCATCTCCTAGGGCCGCCCGA
CGGGGCTAAGGCCTTGGAAGTAGCCGCCCCGGAGTCTCAAGGGCTGGATTCCAGCCTGGACGGGGCGGCG
CGTCCCAAAGGCTCCCGGCGGTCGGTGCCCCGCAGCTCAGGCCAGACCGTCTGTCGCTGCCCCAACTGTC
TGGAGGCGGAGCGACTGGGGGCTCCATGTGGGCCCGATGGGGGCAAGAAGAAGCATTTGCACAACTGCCA
CATCCCGGGCTGCGGGAAAGCCTACGCCAAGACGTCGCACCTGAAGGCGCACCTGCGCTGGCACAGCGGC
GACCGTCCCTTCGTGTGCAACTGGCTCTTCTGCGGCAAGCGCTTCACGCGCTCGGACGAGCTGCAGCGCC
ACCTCCAGACCCACACCGGCACCAAGAAGTTCCCCTGTGCAGTCTGCAGCCGCGTCTTCATGCGCAGCGA
CCACCTGGCCAAGCACATGAAAACCCACGAGGGCGCCAAGGAGGAGGCGGCTGGGGCGGCCTCGGGAGAG
GGCAAGGCCGGCGGCGCAGTGGAGCCCCCCGGGGGCAAAGGCAAACGCGAGGCCGAGGGCAGCGTGGCTC
CCTCCAACTGA

Translation (376 aa):
MLTAVCGSLGSQHTEAPHASPPRLDLQPLQTYQGHTSPEAGDYPSPLQPGELQSLPLGPEVDFSQGYELP
GASSRVTCEDLESDSPLAPGPFSKLLQPDMSHHYESWFRPTHPGAEDGSWWDLHPGTSWMDLPHTQGALT
SPGHPGALQAGLGGYVGDHQLCAPPPHPHAHHLLPAAGGQHLLGPPDGAKALEVAAPESQGLDSSLDGAA
RPKGSRRSVPRSSGQTVCRCPNCLEAERLGAPCGPDGGKKKHLHNCHIPGCGKAYAKTSHLKAHLRWHSG
DRPFVCNWLFCGKRFTRSDELQRHLQTHTGTKKFPCAVCSRVFMRSDHLAKHMKTHEGAKEEAAGAASGE
GKAGGAVEPPGGKGKREAEGSVAPSN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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