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Report for CCDS17059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17059.1 Public Mus musculus 2 Zswim1 23 108 98 CCDS HistoryNCBI Gene:71971Re-query CCDS DB by CCDS ID:17059.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017908.2 ENSMUSP00000017908.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017908.2Link to Ensembl Protein Viewer:ENSMUSP00000017908.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017908Re-query CCDS DB by Protein ID:ENSMUSP00000017908
Original member NCBI NM_028028.2 NP_082304.1 Updated not alive Link to Nucleotide Sequence:NM_028028.2Link to Protein Sequence:NP_082304.1Re-query CCDS DB by Nucleotide ID:NM_028028Re-query CCDS DB by Protein ID:NP_082304
Current member NCBI NM_028028.3 NP_082304.1 Accepted alive Link to Nucleotide Sequence:NM_028028.3Link to Protein Sequence:NP_082304.1Re-query CCDS DB by Nucleotide ID:NM_028028Re-query CCDS DB by Protein ID:NP_082304Link to BLAST:NP_082304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082304.1 455 Q9CWV7 455 100% 0 0

Chromosomal Locations for CCDS 17059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164824830 164826197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGCCCTCACGATGCTGAATGGTCTACTCATTAAGGACTCCAGCCCACCTATGCTGCACCAGATTAGCA
AGACTCCTCAGCTAGATGCCTTCAACTACCAAAGCTGCTTCATGCAAGACCTCTTTGCTCATTTCCCTGA
GGTCTTATTTATCCACCGGACCTATAACCCAAGAGGCAAGGTGTTGTACACCTTCCTGGTAGATGGACCC
CGGGTCCAGGTTGAGGGTCCTCTTGCCCGAGCTGTGTACTTTGCCATCCCTACCAATGAAGATGCCAGAG
GCCTGGCCCAGATGTTCCAGGTGTTCAAAAAGTTTAACCCAGCATGGGAGAGAGTCAATACCATCCTGGT
GGACCCCCACTTCCTCCTGCTGCCCACCCTGACCATGGAGTTCCCCACCGCTGAGGTCTTGCTCTCTGCC
TTCCACATCTGCAAGTTCCTCCAGGGTAAATTCTATCAGCTGCCGTTGGAGCAGCCTGTCCAGAGGCTGC
TTCTGTCCTCCCTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTACACGCTCCT
GAATAACTGCATCCCCTCCAGCAGGCTGCCGGAGCTCCACTCACACTGGCTGCTCAATGACCGCATCTGG
CTGGCCCACCGCTGGAGGAGCCGCGCCCAGAGCAGCCGCTACTTCCAGAGTCTGGAGATCATGGCCCACA
TCCTCAGCCAGTTTTTTGGCACCACCCCATTTGAGAAACAGGGTATGGCGTCTGTGTTCCGATACATGCA
GCAGAACTCTTCGGACAAAGCCAGCCTCAGCCTGGCCGAGACACCCCAGGACAGTCACACTCCTTCAGAG
GCCAGCGCTGAAAACCCCAACACAGAGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCT
GCACGGGGCCAGCCGCCCAGCTTTGCCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGG
CTCCGGCTCCGAGAAGATGAGCATCCAGATTCTGGAGGACACGCACACCGTCCAGCCCCAGCCCCCCGCC
AGCTGCAGCTGCTACTTTAACCAAGCCTTCCACCTGCCCTGCCGCCACATCCTAGCCATGCTCAGTGCCC
GCCAGCAGGTACTCCAGCCCGACATGCTGCCCGCTCAGTGGACCTCGGGCTGTGCCTCCAGTCTAGACAG
TATCCTAGGCAGCAAGTGGAGTGCCAGCCTGGATAAGCACCTGGCTGTGACTCTGCTCACTGAAGAGGTG
GGTCGGCTCTTACAGCACTGCAGCGAGGAGGAGTTCGAGCGTCGCTACAGCACCCTCCGGGAACTGGCCG
ACAACTGGATCGGCCCTTATGAGCAGGTACAGCTCTAA

Translation (455 aa):
MALTMLNGLLIKDSSPPMLHQISKTPQLDAFNYQSCFMQDLFAHFPEVLFIHRTYNPRGKVLYTFLVDGP
RVQVEGPLARAVYFAIPTNEDARGLAQMFQVFKKFNPAWERVNTILVDPHFLLLPTLTMEFPTAEVLLSA
FHICKFLQGKFYQLPLEQPVQRLLLSSLQSTMCSATAGNLRKLYTLLNNCIPSSRLPELHSHWLLNDRIW
LAHRWRSRAQSSRYFQSLEIMAHILSQFFGTTPFEKQGMASVFRYMQQNSSDKASLSLAETPQDSHTPSE
ASAENPNTEQLVEARIQHSLNAICTGPAAQLCLGELAVVQKSMHLIGSGSEKMSIQILEDTHTVQPQPPA
SCSCYFNQAFHLPCRHILAMLSARQQVLQPDMLPAQWTSGCASSLDSILGSKWSASLDKHLAVTLLTEEV
GRLLQHCSEEEFERRYSTLRELADNWIGPYEQVQL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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