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Report for CCDS27346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27346.1 Public Mus musculus 14 Clybl 23 108 98 CCDS HistoryNCBI Gene:69634Re-query CCDS DB by CCDS ID:27346.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026625.6 ENSMUSP00000026625.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026625.6Link to Ensembl Protein Viewer:ENSMUSP00000026625.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026625Re-query CCDS DB by Protein ID:ENSMUSP00000026625
Original member Current member NCBI NM_029556.3 NP_083832.2 Accepted alive Link to Nucleotide Sequence:NM_029556.3Link to Protein Sequence:NP_083832.2Re-query CCDS DB by Nucleotide ID:NM_029556Re-query CCDS DB by Protein ID:NP_083832Link to BLAST:NP_083832.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083832.2 338 Q8R4N0 338 100% 0 0

Chromosomal Locations for CCDS 27346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 122181726 122181781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122311244 122311430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122371241 122371429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122375882 122375983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122377784 122377877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122379203 122379370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122384198 122384322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122401947 122402042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCGTTGTGCGTGCTGCGGAACACGGTTCGTGGAGCGGCGGCGCTGCCCAGGCTGAAGGCATCCCACG
TGGTCAGTGTCTACAAGCCTAGATACAGCTCCTTGTCCAATCACAAGTATGTCCCCCGGAGAGCAGTGCT
CTATGTCCCTGGGAATGACGAAAAGAAAATAAGGAAGATCCCGTCCTTGAAAGTAGATTGTGCCGTGCTG
GACTGCGAGGATGGTGTTGCAGAAAACAAAAAGAATGAAGCTCGATTGAGAATAGCAAAAACTCTTGAAG
ACTTTGACCTGGGCACAACGGAAAAGTGTGTGAGAATCAACTCGGTGTCTAGTGGTCTGGCTGAAGTCGA
CCTGGAGACATTTCTACAGGCCAGAGTTCTTCCCTCTAGTCTGATGCTACCAAAGGTAGAAGGTCCTGAA
GAAATCCGATGGTTTTCAGACAAATTTTCACTCCACTTAAAAGGCCGAAAACTTGAACAACCAATGAATT
TAATCCCCTTTGTGGAGACTGCAATGGGTTTGCTCAATTTTAAGGCAGTGTGTGAAGAAACACTAAAGAC
TGGACCTCAAGTGGGTCTTTGCCTAGATGCAGTCGTTTTTGGAGGAGAAGATTTTCGAGCCAGCATAGGT
GCAACAAGCAACAAAGACACCCAAGACATCCTCTATGCCCGGCAGAAGGTTGTTGTCACGGCAAAAGCCT
TTGGCCTACAAGCCATAGATCTTGTGTACATTGACTTCCGAGATGAAGACGGACTTCTCAGACAGTCAAG
GGAAGCAGCCGCCATGGGCTTCACTGGTAAACAGGTGATCCACCCTAACCAGATCGCAGTGGTACAGGAA
CAGTTTACTCCAACCCCAGAAAAAATTCAGTGGGCTGAAGAGCTGATTGCTGCCTTCAAAGAACACCAGC
AGCTGGGAAAGGGAGCCTTTACTTTCCGAGGAAGTATGATCGACATGCCATTACTGAAGCAGGCCCAGAA
CATTGTTACGCTTGCCACATCCATCAAGGAAAAATGA

Translation (338 aa):
MALCVLRNTVRGAAALPRLKASHVVSVYKPRYSSLSNHKYVPRRAVLYVPGNDEKKIRKIPSLKVDCAVL
DCEDGVAENKKNEARLRIAKTLEDFDLGTTEKCVRINSVSSGLAEVDLETFLQARVLPSSLMLPKVEGPE
EIRWFSDKFSLHLKGRKLEQPMNLIPFVETAMGLLNFKAVCEETLKTGPQVGLCLDAVVFGGEDFRASIG
ATSNKDTQDILYARQKVVVTAKAFGLQAIDLVYIDFRDEDGLLRQSREAAAMGFTGKQVIHPNQIAVVQE
QFTPTPEKIQWAEELIAAFKEHQQLGKGAFTFRGSMIDMPLLKQAQNIVTLATSIKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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