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Report for CCDS94668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94668.1 Public Homo sapiens X PABIR2 24 110 108 CCDS HistoryNCBI Gene:159090Re-query CCDS DB by CCDS ID:94668.1Re-query CCDS DB by GeneID:159090See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94668.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343004.10 ENSP00000339207.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343004.10Link to Ensembl Protein Viewer:ENSP00000339207.6Re-query CCDS DB by Nucleotide ID:ENST00000343004Re-query CCDS DB by Protein ID:ENSP00000339207
Original member Current member EBI ENST00000611027.2 ENSP00000479150.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611027.2Link to Ensembl Protein Viewer:ENSP00000479150.2Re-query CCDS DB by Nucleotide ID:ENST00000611027Re-query CCDS DB by Protein ID:ENSP00000479150
Original member Current member NCBI NM_001387468.1 NP_001374397.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001387468.1Link to Protein Sequence:NP_001374397.1Re-query CCDS DB by Nucleotide ID:NM_001387468Re-query CCDS DB by Protein ID:NP_001374397Link to BLAST:NP_001374397.1

Chromosomal Locations for CCDS 94668.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134772139 134772283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134781821 134781917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134785886 134785950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134787472 134787533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134788730 134788831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789085 134789139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789223 134789266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789580 134789636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134793815 134793893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134796108 134796205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGCTCAGGAGAAAATGGAGCTGGACCTTGAGCCTGACACATCTTATGGGGGAACCCTGAGGAGATCCA
GCAGCGCTCCCCTAATCCATGGGCTCAGTGACCTTTCACAGGTTTTCCAACCTTACACACTTAGAACTCG
GAGGAATAGTACAACAATTATGAGCCGTCACAGCCTGTTGCTGTCATCCTCACCTAATCGTATTCCTAGT
AGCAGACTGCATCAGATCAAAAGGGAAGAAGGCCTGGATATGGTGAACAGAGAAACTGCACATGAAAGGG
AAATGCAAACGGCAATGCAGATAAGCCAATCATGGGATGAGAGCTTGAGCCTGAGTGACAGTGATTTTGA
CAAGCCGGAGAAATTATATTCTCCTAAGAGAATTGACTTCACTCCAGTTTCTCCAGCACCTTCACCCACC
AGGGGATTCGGAAAGATGTTCGTGAGCAGCAGTGGATTGCCACCAAGTCCAGTTCCCAGTCCAAGACGAT
TTTCAAGCAGGAGAAGTCAGAGTCCAGTCAAGTGCATTAGACCCAGTGTTCTTGGTCCTCTTAAAAGAAA
AGGTGAAATGGAGACAGAAAGTCAGCCCAAGAGACTCTTCCAAGGCACTACCAATATGTTATCTCCAGAT
GCCGCGCAACTGTCTGATCTCAGTTCATGTTCAGATATTTTGGATGGCAGTAGTAGCAGCAGTGGCTTAT
CCTCAGACCCGCTGGCTAAAGGCAGCGCTACCGCAGAGTCTCCAGTAGCATGCTCCAATTCATGCTCTTC
GTTCATCTTGATGGATGATCTCTCACCCAAGTGA

Translation (267 aa):
MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLLLSSSPNRIPS
SRLHQIKREEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPT
RGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPD
AAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFILMDDLSPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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