NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55428.1 Public Homo sapiens X KLF8 24 110 108 CCDS HistoryNCBI Gene:11279Re-query CCDS DB by CCDS ID:55428.1Re-query CCDS DB by GeneID:11279See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55428.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374928.7 ENSP00000364063.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374928.7Link to Ensembl Protein Viewer:ENSP00000364063.3Re-query CCDS DB by Nucleotide ID:ENST00000374928Re-query CCDS DB by Protein ID:ENSP00000364063
Original member Current member NCBI NM_001159296.2 NP_001152768.1 Accepted alive Link to Nucleotide Sequence:NM_001159296.2Link to Protein Sequence:NP_001152768.1Re-query CCDS DB by Nucleotide ID:NM_001159296Re-query CCDS DB by Protein ID:NP_001152768Link to BLAST:NP_001152768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152768.1 257 O95600-3 257 100% 0 0

Chromosomal Locations for CCDS 55428.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 56233335 56233341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56250231 56250304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56265180 56265744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56269378 56269489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56284313 56284328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGTCGATATGGATAAACTCATAAACAACTTGGAGGTCCAACTTAATTCAGAAGGTGGCTCAATGCAGG
TATTCAAGCAGGTCACTGCTTCTGTTCGGAACAGAGATCCCCCTGAGATAGAATACAGAAGTAATATGAC
TTCTCCAACACTCCTGGATGCCAACCCCATGGAGAACCCAGCACTGTTTAATGACATCAAGATTGAGCCC
CCAGAAGAACTTTTGGCTAGTGATTTCAGCCTGCCCCAAGTGGAACCAGTTGACCTCTCCTTTCACAAGC
CCAAGGCTCCTCTCCAGCCTGCTAGCATGCTACAAGCTCCAATACGTCCCCCCAAGCCACAGTCTTCTCC
CCAGACCCTTGTGGTGTCCACGTCAACATCTGACATGAGCACTTCAGCAAACATTCCTACTGTTCTGACC
CCAGGCTCTGTCCTGACCTCCTCTCAGAGCACTGGTAGCCAGCAGATCTTACATGTCATTCACACTATCC
CCTCAGTCAGTCTGCCAAATAAGATGGGTGGCCTGAAGACCATCCCAGTGGTAGTGCAGTCTCTGCCCAT
GGTGTATACTACTTTGCCTGCAGATGGGGGCCCTGCAGCCATTACAGTCCCACTCATTGGAGGAGATGGT
AAAAATGCTGGATCAGTGAAAGTTGACCCCACCTCCATGTCTCCACTGGAAATTCCAAGTGACAGTGAGG
AGAGTACAATTGAGAGTGGATCCTCAGCCTTGCAGAGTCTGCAGGGACTACAGCAAGAGAGAGAAGCCTT
ATAA

Translation (257 aa):
MVDMDKLINNLEVQLNSEGGSMQVFKQVTASVRNRDPPEIEYRSNMTSPTLLDANPMENPALFNDIKIEP
PEELLASDFSLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPQSSPQTLVVSTSTSDMSTSANIPTVLT
PGSVLTSSQSTGSQQILHVIHTIPSVSLPNKMGGLKTIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDG
KNAGSVKVDPTSMSPLEIPSDSEESTIESGSSALQSLQGLQQEREAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH