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Report for CCDS87747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87747.1 Public Homo sapiens X KDM5C 24 110 108 CCDS HistoryNCBI Gene:8242Re-query CCDS DB by CCDS ID:87747.1Re-query CCDS DB by GeneID:8242See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87747.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375379.7 ENSP00000364528.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375379.7Link to Ensembl Protein Viewer:ENSP00000364528.3Re-query CCDS DB by Nucleotide ID:ENST00000375379Re-query CCDS DB by Protein ID:ENSP00000364528
Original member Current member NCBI NM_001353978.3 NP_001340907.1 Accepted alive Link to Nucleotide Sequence:NM_001353978.3Link to Protein Sequence:NP_001340907.1Re-query CCDS DB by Nucleotide ID:NM_001353978Re-query CCDS DB by Protein ID:NP_001340907Link to BLAST:NP_001340907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340907.1 1557 P41229-2 1557 100% 0 0

Chromosomal Locations for CCDS 87747.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53192967 53193332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53193437 53193636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53193782 53193851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53194139 53194738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53194931 53195068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53195231 53195410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53195916 53196054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53196686 53197044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53197771 53197876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53198490 53198637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53198764 53198888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53198977 53199158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53201550 53201744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53201854 53201973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53210414 53210576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53210676 53210857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53211497 53211655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53211787 53211906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53214689 53214847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53215795 53215976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53216074 53216197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53217143 53217277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53217796 53217966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53218276 53218398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53220839 53220916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53224740 53224889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4674 nt):
ATGGAGCCGGGGTCCGACGATTTCCTACCGCCACCGGAGTGCCCGGTGTTCGAGCCTAGCTGGGCCGAGT
TCCGAGACCCTCTTGGCTACATCGCGAAAATCAGGCCCATCGCAGAGAAATCGGGCATTTGCAAGATCCG
CCCACCCGCGGACTGGCAGCCACCCTTTGCTGTGGAAGTGGACAACTTCAGGTTTACCCCCCGAATCCAG
AGGCTGAATGAGCTAGAGGCCCAGACGAGAGTGAAACTGAACTACTTGGACCAGATTGCCAAATTCTGGG
AAATCCAGGGCTCCTCCTTAAAGATTCCCAATGTAGAACGGCGGATCTTGGACCTCTACAGTCTCAGCAA
AATTGTGGTGGAGGAAGGTGGTTATGAAGCTATCTGCAAGGACCGTCGGTGGGCTCGGGTAGCCCAGCGC
CTCAACTATCCACCAGGCAAAAATATTGGCTCCTTGCTACGCTCCCACTACGAACGCATTGTTTATCCCT
ATGAAATGTACCAGTCTGGAGCCAACCTTGTGCAGTGTAACACACGTCCATTTGATAATGAGGAGAAGGA
CAAGGAATACAAACCCCACAGCATCCCCCTACGACAGTCTGTGCAGCCTTCCAAGTTCAACAGCTATGGC
CGGCGGGCCAAGAGACTGCAGCCTGATCCGGAACCCACAGAGGAAGACATTGAGAAGAATCCAGAGCTGA
AAAAGCTACAGATCTATGGGGCAGGCCCCAAGATGATGGGCCTGGGCCTCATGGCCAAAGACAAGACTCT
GCGGAAGAAAGATAAGGAGGGGCCTGAGTGTCCCCCCACAGTAGTGGTGAAGGAGGAGTTAGGTGGGGAT
GTGAAGGTGGAGTCAACATCGCCTAAGACCTTCCTGGAGAGCAAGGAGGAGCTGAGTCACAGCCCAGAAC
CCTGCACCAAGATGACCATGAGGCTACGGAGGAACCACAGCAATGCCCAGTTTATTGAGTCATATGTCTG
CCGGATGTGTTCTCGAGGGGATGAGGATGACAAGCTCCTGCTGTGTGATGGCTGTGATGACAACTACCAC
ATCTTCTGCCTGCTGCCTCCTCTGCCTGAGATCCCCAAGGGTGTCTGGCGGTGCCCAAAGTGTGTCATGG
CGGAGTGTAAGCGGCCCCCAGAAGCCTTTGGCTTTGAGCAGGCTACCCGGGAATACACTCTGCAGAGCTT
TGGCGAGATGGCCGACTCCTTTAAAGCTGACTACTTCAACATGCCCGTGCATATGGTGCCCACAGAACTT
GTGGAGAAGGAGTTCTGGAGGCTGGTAAATAGCATTGAGGAAGATGTGACTGTTGAGTATGGAGCTGACA
TCCATTCCAAAGAATTTGGCAGCGGTTTCCCTGTCAGTGACAGTAAACGGCACCTAACCCCCGAAGAGGA
GGAGTATGCTACCAGTGGTTGGAACCTAAATGTGATGCCGGTGTTGGAACAGTCTGTACTGTGCCACATC
AATGCAGATATCTCTGGCATGAAGGTGCCCTGGCTCTACGTGGGCATGGTCTTCTCAGCCTTTTGCTGGC
ATATTGAGGATCACTGGAGTTACTCCATTAACTACCTCCACTGGGGTGAGCCGAAGACCTGGTATGGGGT
GCCCTCACTTGCAGCAGAACATTTGGAAGAAGTGATGAAGAAGCTGACACCTGAACTATTTGATAGCCAG
CCTGACCTCCTGCACCAACTTGTCACCCTCATGAATCCCAACACCCTCATGTCCCATGGTGTGCCAGTTG
TCCGCACAAACCAGTGTGCAGGAGAGTTTGTCATCACCTTCCCCCGTGCTTACCACAGCGGCTTCAACCA
AGGCTACAACTTTGCCGAGGCTGTCAACTTTTGCACTGCTGACTGGTTGCCTGCTGGGCGCCAGTGCATT
GAGCACTACCGCCGGCTCCGGAGATACTGCGTCTTCTCCCATGAGGAGCTTATCTGCAAGATGGCTGCCT
GCCCAGAGAAGCTAGACCTGAACCTGGCGGCAGCTGTGCATAAGGAGATGTTCATCATGGTGCAAGAAGA
GCGGCGTCTACGAAAGGCCCTGCTGGAGAAGGGTATCACAGAGGCTGAGCGAGAGGCTTTCGAGCTGCTC
CCAGATGATGAGCGCCAGTGTATCAAGTGCAAGACTACGTGTTTCCTGTCAGCCCTGGCCTGCTACGACT
GCCCAGACGGCCTTGTCTGCCTTTCCCACATCAATGATCTCTGCAAGTGCTCCAGTAGCCGGCAGTACCT
GCGGTATCGGTATACCTTGGATGAGCTTCCTGCCATGCTGCATAAGCTGAAGGTTCGGGCTGAGTCCTTT
GACACCTGGGCCAACAAAGTGCGAGTGGCCCTGGAGGTGGAGGATGGGCGGAAGCGCAGCCTTGAAGAAC
TGAGGGCACTAGAGTCTGAAGCCCGTGAGCGGAGGTTTCCTAATAGTGAGCTGCTGCAGCAACTAAAGAA
CTGCCTGAGTGAGGCAGAGGCTTGCGTGTCCCGAGCTCTGGGACTGGTCAGCGGCCAGGAAGCTGGCCCC
CACAGGGTGGCTGGTCTACAGATGACCCTGACTGAGCTCCGGGCCTTTCTGGACCAGATGAACAACCTGC
CTTGCGCCATGCACCAGATTGGGGATGTCAAGGGTGTTCTGGAACAGGTGGAGGCCTACCAGGCTGAGGC
TCGTGAGGCCCTGGCCTCACTGCCCTCCAGTCCAGGGCTACTGCAGTCCCTGTTGGAGAGGGGGCGGCAG
CTGGGGGTGGAGGTGCCTGAGGCCCAGCAGCTCCAGCGGCAGGTGGAACAGGCGCGATGGCTGGATGAGG
TGAAACGCACACTGGCCCCCTCAGCCCGAAGGGGCACCTTGGCTGTCATGCGAGGACTGTTGGTCGCGGG
TGCCAGTGTAGCCCCTAGCCCTGCTGTGGATAAAGCCCAGGCCGAGCTGCAGGAACTGCTGACCATTGCT
GAACGCTGGGAGGAGAAAGCCCACCTCTGCCTGGAGGCCAGGCAGAAGCATCCACCAGCCACACTTGAGG
CCATAATCCGTGAAGCGGAAAACATCCCTGTTCACCTGCCCAACATCCAGGCTCTCAAGGAGGCTCTTGC
TAAGGCCCGGGCCTGGATTGCTGATGTTGATGAGATCCAAAATGGTGACCACTACCCCTGCCTGGATGAC
TTGGAGGGCCTAGTAGCTGTGGGCCGGGACCTACCTGTGGGGCTGGAGGAGCTGAGACAGCTAGAGCTAC
AGGTACTGACAGCGCACTCCTGGAGGGAGAAGGCCTCCAAGACCTTCCTCAAGAAAAATTCTTGCTACAC
GCTGCTGGAGGTTCTCTGCCCATGTGCAGATGCCGGCTCAGACAGCACCAAGCGCAGCCGGTGGATGGAG
AAGGAGCTGGGGTTGTACAAATCTGACACAGAGCTGCTGGGGCTGTCTGCGCAGGACCTCAGGGACCCAG
GCTCTGTGATCGTGGCCTTCAAGGAGGGGGAACAGAAGGAGAAGGAGGGTATCCTGCAGCTGCGTCGCAC
CAATTCGGCCAAGCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAACCTCTATCTGTGTGTGT
GGGCAGGTGCTGGCTGGGGCGGGAGCTCTGCAGTGTGACCTGTGTCAGGACTGGTTCCATGGGCGGTGTG
TGTCAGTGCCTCGCCTCCTCAGCTCTCCGAGGCCCAATCCCACCTCATCCCCACTGCTGGCCTGGTGGGA
ATGGGACACCAAATTCCTGTGTCCACTGTGTATGCGCTCAAGGCGCCCGCGCCTGGAGACCATCCTGGCA
CTGCTGGTAGCCCTGCAGAGACTGCCTGTGCGGCTGCCCGAGGGCGAGGCCCTGCAGTGCCTCACAGAGA
GGGCCATCAGCTGGCAAGGCCGCGCCAGGCAGGCTCTGGCCTCTGAAGATGTGACTGCTCTTTTGGGACG
GCTGGCTGAGCTCCGCCAACGGCTACAGGCTGAACCTAGACCTGAGGAGCCTCCTAACTACCCTGCAGCC
CCTGCTTCTGACCCCCTCAGAGAGGGCAGTGGCAAGGATATGCCTAAGGTCCAGGGCTTACTGGAGAATG
GAGACAGTGTGACCAGTCCTGAGAAGGTAGCCCCGGAGGAGGGCTCAGATCTGGAGCTGCTGTCCTCGCT
GTTGCCACAGTTGACTGGCCCTGTGTTGGAACTGCCTGAGGCAACCCGGGCCCCCTTGGAGGAGCTCATG
ATGGAGGGGGACCTGCTCGAGGTGACCCTGGATGAGAACCACAGCATATGGCAGCTGCTGCAGGCTGGAC
AGCCCCCAGACCTGGAGAGGATCCGCACACTTCTGGAGCTGGAGAAGGCAGAGCGTCACGGGAGTCGGGC
TCGGGGCCGGGCCCTGGAGAGGCGGCGGCGGCGGAAGGTGGATCGGGGTGGGGAGGGCGATGACCCAGCC
CGAGAGGAGCTAGAGCCAAAGAGGGTACGGAGCTCAGGGCCAGAGGCTGAGGAGGTCCAGGAGGAGGAAG
AGCTGGAGGAGGAGACTGGGGGTGAGGGCCCCCCTGCACCCATCCCCACCACTGGCAGCCCCAGCACCCA
GGAGAACCAGAATGGCTTGGAACCGGCGGAAGGGACCACTTCAGGCCCCTCGGCCCCTTTCTCCACTCTG
ACTCCCCGGCTGCATCTGCCCTGCCCACAGCAGCCGCCTCAGCAACAGTTGTGA

Translation (1557 aa):
MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQ
RLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQR
LNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYG
RRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEELGGD
VKVESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYH
IFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTEL
VEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHI
NADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQ
PDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCI
EHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELL
PDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESF
DTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQQLKNCLSEAEACVSRALGLVSGQEAGP
HRVAGLQMTLTELRAFLDQMNNLPCAMHQIGDVKGVLEQVEAYQAEAREALASLPSSPGLLQSLLERGRQ
LGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKAQAELQELLTIA
ERWEEKAHLCLEARQKHPPATLEAIIREAENIPVHLPNIQALKEALAKARAWIADVDEIQNGDHYPCLDD
LEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWME
KELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASSSTASSTTSICVC
GQVLAGAGALQCDLCQDWFHGRCVSVPRLLSSPRPNPTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILA
LLVALQRLPVRLPEGEALQCLTERAISWQGRARQALASEDVTALLGRLAELRQRLQAEPRPEEPPNYPAA
PASDPLREGSGKDMPKVQGLLENGDSVTSPEKVAPEEGSDLELLSSLLPQLTGPVLELPEATRAPLEELM
MEGDLLEVTLDENHSIWQLLQAGQPPDLERIRTLLELEKAERHGSRARGRALERRRRRKVDRGGEGDDPA
REELEPKRVRSSGPEAEEVQEEEELEEETGGEGPPAPIPTTGSPSTQENQNGLEPAEGTTSGPSAPFSTL
TPRLHLPCPQQPPQQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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