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Report for CCDS43870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43870.1 Public Homo sapiens 9 WHRN 24 110 108 CCDS HistoryNCBI Gene:25861Re-query CCDS DB by CCDS ID:43870.1Re-query CCDS DB by GeneID:25861See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265134.10 ENSP00000265134.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265134.10Link to Ensembl Protein Viewer:ENSP00000265134.6Re-query CCDS DB by Nucleotide ID:ENST00000265134Re-query CCDS DB by Protein ID:ENSP00000265134
Original member Current member NCBI NM_001083885.3 NP_001077354.2 Accepted alive Link to Nucleotide Sequence:NM_001083885.3Link to Protein Sequence:NP_001077354.2Re-query CCDS DB by Nucleotide ID:NM_001083885Re-query CCDS DB by Protein ID:NP_001077354Link to BLAST:NP_001077354.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077354.2 524 Q9P202-3 524 100% 0 0

Chromosomal Locations for CCDS 43870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114402754 114402936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114403217 114403339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114403896 114404077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114406355 114406892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114407947 114408018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114423314 114423523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114424334 114424546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114424988 114425024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114426211 114426227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGCGAACTCGGCAGGGTTTCTTGGCGATCTCACAACAGAAGGAATAAACAAGCCAGGATTTTACAAGG
GCCCAGCCGGCTCCCAGGTGACCCTGAGCAGCCTGGGGAACCAGACACGAGTGCTGCTGGAGGAGCAGGC
TCGGCACCTGCTGAACGAGCAGGAACACGCCACCATGGCCTACTACCTGGATGAGTACCGTGGTGGCAGC
GTCTCTGTGGAGGCCCTCGTCATGGCCCTGTTCAAGCTGCTCAACACCCACGCCAAGTTCTCACTCCTCT
CTGAGGTGAGAGGCACCATTTCCCCGCAAGACCTAGAACGCTTCGACCACCTGGTGCTGAGGCGTGAGAT
TGAGTCCATGAAGGCGCGGCAGCCCCCAGGCCCCGGGGCTGGGGACACCTACTCCATGGTCTCCTACAGT
GACACGGGTTCATCCACAGGCAGCCACGGCACCTCCACCACCGTCAGCTCGGCCAGGAACACTCTGGACC
TGGAGGAAACTGGCGAGGCTGTCCAGGGCAATATCAACGCCCTCCCAGATGTGTCCGTGGATGATGTCAG
ATCCACCTCCCAGGGGCTGTCAAGCTTCAAGCCACTGCCTCGCCCACCACCTCTGGCCCAAGGCAACGAC
CTCCCACTAGGCCAGCCAAGGAAGCTGGGGAGAGAGGACCTCCAGCCACCTTCCTCCATGCCTTCCTGCT
CGGGCACTGTCTTCTCGGCTCCACAGAACCGCAGCCCGCCAGCGGGCACCGCACCCACCCCAGGGACCTC
CTCTGCACAGGACTTGCCCTCTTCCCCCATCTATGCCTCCGTCTCCCCTGCCAACCCCAGCTCCAAGAGG
CCGCTGGACGCCCATCTGGCCCTGGTCAACCAACACCCCATCGGCCCCTTCCCACGGGTCCAGTCACCCC
CGCACCTGAAAAGCCCCTCTGCAGAGGCCACAGTGGCTGGGGGCTGCCTTCTGCCCCCATCACCCTCTGG
CCACCCAGACCAGACAGGCACAAACCAGCACTTTGTCATGGTGGAGGTCCACCGCCCCGACAGCGAGCCA
GACGTCAATGAAGTGAGGGCGCTGCCCCAGACGCGCACAGCCTCTACGCTCTCCCAGCTCTCGGACAGCG
GGCAGACTCTAAGCGAGGACAGTGGTGTGGATGCTGGCGAGGCAGAGGCCAGCGCCCCAGGCCGAGGAAG
GCAGTCGGTGTCCACCAAGAGCAGGAGTAGCAAGGAGCTGCCTCGGAACGAGAGGCCCACAGATGGGGCC
AACAAACCGCCTGGACTTCTGGAGCCCACGTCCACTCTGGTCCGTGTGAAGAAAAGTGCGGCCACCCTGG
GCATCGCCATCGAGGGTGGCGCCAACACCCGCCAGCCCCTGCCTAGGATTGTCACTATTCAGAGAGGCGG
CTCAGCTCACAACTGTGGGCAGCTCAAGGTGGGCCACGTGATTCTGGAAGTGAATGGGCTGACGCTTCGG
GGCAAGGAGCACCGGGAGGCCGCCCGCATTATCGCCGAGGCCTTCAAGACTAAGGACCGTGACTACATTG
ACTTTCTGGTCACTGAGTTCAATGTGATGCTCTAG

Translation (524 aa):
MANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGNQTRVLLEEQARHLLNEQEHATMAYYLDEYRGGS
VSVEALVMALFKLLNTHAKFSLLSEVRGTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYS
DTGSSTGSHGTSTTVSSARNTLDLEETGEAVQGNINALPDVSVDDVRSTSQGLSSFKPLPRPPPLAQGND
LPLGQPRKLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTSSAQDLPSSPIYASVSPANPSSKR
PLDAHLALVNQHPIGPFPRVQSPPHLKSPSAEATVAGGCLLPPSPSGHPDQTGTNQHFVMVEVHRPDSEP
DVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGEAEASAPGRGRQSVSTKSRSSKELPRNERPTDGA
NKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLR
GKEHREAARIIAEAFKTKDRDYIDFLVTEFNVML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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