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Report for CCDS6402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6402.1 Public Homo sapiens 8 ZC3H3 24 110 108 CCDS HistoryNCBI Gene:23144Re-query CCDS DB by CCDS ID:6402.1Re-query CCDS DB by GeneID:23144See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262577.6 ENSP00000262577.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262577.6Link to Ensembl Protein Viewer:ENSP00000262577.5Re-query CCDS DB by Nucleotide ID:ENST00000262577Re-query CCDS DB by Protein ID:ENSP00000262577
Original member Current member NCBI NM_015117.3 NP_055932.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015117.3Link to Protein Sequence:NP_055932.2Re-query CCDS DB by Nucleotide ID:NM_015117Re-query CCDS DB by Protein ID:NP_055932Link to BLAST:NP_055932.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055932.2 948 Q8IXZ2-1 948 100% 0 0

Chromosomal Locations for CCDS 6402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143438056 143438087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143440041 143440363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143440936 143441120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143465717 143465848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143468209 143468278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143468382 143468540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143468617 143468659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143475398 143475585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143507746 143507899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143536257 143536453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143538003 143539320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143541376 143541421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2847 nt):
ATGGAGGAAAAGGAGATATTACGGCGGCAGATCCGCCTACTGCAGGGTCTGATTGATGACTACAAAACCC
TCCACGGCAATGCCCCGGCCCCTGGTACCCCAGCAGCTTCTGGGTGGCAGCCACCCACTTACCACAGTGG
CAGAGCCTTTAGTGCCCGCTACCCTCGTCCAAGCCGGAGGGGCTACTCTTCCCACCATGGGCCTTCGTGG
CGCAAGAAATACTCCCTCGTGAATCGGCCCCCGGGACCCTCAGACCCTCCTGCCGACCATGCTGTGCGGC
CGTTGCACGGGGCCCGGGGGGGCCAGCCTCCTGTCCCGCAGCAGCATGTCCTTGAGAGACAGGTCCAGCT
CAGTCAGGGTCAGAACGTGGTCATCAAAGTTAAACCGCCATCAAAGTCTGGCTCTGCCAGTGCCTCAGGG
GCCCAGCGGGGCTCTTTGGAAGAATTTGAGGAAACCCCCTGGAGTGACCAAAGGCCCCGGGAAGGTGAAG
GTGAGCCCCCTCGGGGACAGCTGCAGCCCTCGAGGCCAACAAGAGCCAGGGGGACCTGCAGTGTGGAAGA
TCCTCTTCTGGTCTGCCAGAAGGAGCCTGGTAAGCCCAGGATGGTGAAGTCAGTGGGCAGTGTGGGCGAC
AGCCCCCGGGAGCCCCGCCGGACAGTCAGTGAGAGTGTGATTGCCGTCAAGGCGAGCTTCCCATCCTCCG
CTCTGCCCCCACGCACTGGCGTGGCCCTGGGCCGGAAGCTGGGTTCTCATTCCGTGGCCAGCTGTGCTCC
ACAGCTCCTTGGGGACAGGAGAGTAGATGCTGGCCACACAGATCAGCCAGTTCCGTCTGGCTCAGTGGGG
GGCCCCGCCAGACCGGCCTCAGGACCCAGGCAGGCCCGGGAGGCCTCGCTGGTTGTGACCTGTCGAACTA
ACAAGTTCCGGAAAAACAACTACAAATGGGTGGCTGCCTCCTCGAAGAGTCCCCGGGTTGCTCGGAGGGC
CCTCAGTCCCAGAGTGGCTGCAGAGAATGTGTGCAAGGCCTCTGCTGGCATGGCAAACAAGGTGGAGAAG
CCGCAGCTCATAGCTGACCCAGAGCCCAAGCCCAGGAAGCCAGCCACGTCCTCCAAGCCAGGGTCTGCCC
CCAGCAAGTACAAGTGGAAGGCCTCCAGCCCCTCTGCCTCCTCCTCTTCCTCCTTCCGTTGGCAGTCGGA
GGCCAGCAGCAAGGACCATGCCTCCCAGCTCTCCCCAGTCCTGTCTAGGTCCCCGTCGGGGGACAGACCA
GCAGTAGGACACAGTGGCTTGAAGCCCCTCTCTGGGGAGACCCCGCTCTCGGCTTACAAAGTGAAGAGCC
GCACCAAGATCATCCGGAGACGCAGCAGCACAAGCCTTCCTGGAGACAAGAAAAGCGGCACCTCACCTGC
CGCCACCGCCAAGAGCCACCTCAGCCTCCGGCGGAGACAGGCCCTCAGGGGGAAGAGCAGCCCTGTCCTG
AAGAAGACCCCCAACAAGGGCCTGGTACAGGTCACCACGCACCGACTATGTCGCCTGCCACCGAGCCGGG
CCCACCTCCCCACCAAGGAAGCGTCCAGCCTGCATGCCGTGCGGACTGCACCCACCAGCAAGGTGATCAA
GACCCGCTACCGCATTGTCAAGAAGACGCCGGCCTCGCCTCTCAGCGCCCCGCCCTTCCCCCTGTCTCTG
CCCTCCTGGCGGGCCCGGCGGCTCTCACTATCCAGGTCCCTGGTGCTGAACCGCCTGCGTCCAGTTGCCA
GCGGGGGTGGGAAAGCCCAACCGGGCTCCCCTTGGTGGCGGAGCAAAGGCTACCGCTGCATCGGAGGGGT
CCTCTACAAAGTATCTGCCAACAAGCTCTCCAAGACCTCCGGCCAGCCCAGTGATGCGGGCAGCAGGCCC
CTCCTGCGCACAGGCCGGCTGGATCCTGCAGGCAGCTGTAGCCGTTCCCTGGCCAGCCGGGCAGTGCAGC
GCAGCCTGGCCATCATCCGGCAGGCGCGGCAGCGCAGGGAGAAGAGGAAGGAGTACTGCATGTACTACAA
CCGCTTCGGCAGGTGCAACCGTGGCGAGCGCTGCCCCTACATCCACGATCCCGAGAAGGTGGCCGTGTGC
ACCAGGTTTGTCCGGGGCACCTGCAAGAAAACGGATGGGACCTGCCCCTTCTCCCACCATGTGTCCAAGG
AGAAGATGCCGGTGTGCTCCTACTTCCTGAAGGGCATCTGCAGCAACAGCAACTGTCCCTATAGCCACGT
GTACGTGTCCCGCAAGGCCGAGGTCTGCAGCGACTTCCTCAAAGGCTACTGCCCCCTGGGTGCAAAGTGC
AAGAAGAAACACACGCTGCTGTGCCCCGACTTTGCCCGCAGGGGGGCGTGTCCCCGCGGCGCCCAGTGCC
AGCTGCTCCACCGTACCCAGAAACGCCACAGTCGGCGGGCAGCCACGTCCCCCGCCCCAGGGCCCAGCGA
CGCAACCGCCAGGAGCAGGGTCTCGGCCAGCCACGGGCCCAGGAAGCCTTCAGCATCCCAGCGCCCCACC
AGGCAGACGCCCAGCTCGGCTGCCCTCACTGCGGCTGCCGTGGCTGCACCTCCCCACTGCCCAGGGGGGT
CAGCCTCTCCCTCATCCTCGAAGGCTTCCTCCTCCTCCTCCTCCTCCTCATCCCCTCCCGCTTCCTTGGA
CCACGAGGCACCATCTCTCCAGGAGGCTGCCTTAGCAGCAGCGTGCTCCAACAGGCTCTGCAAGCTGCCT
TCCTTCATCTCCCTGCAGTCCTCGCCGAGCCCAGGAGCCCAGCCCAGGGTCCGGGCCCCTAGGGCCCCCC
TCACCAAGGACTCAGGGAAGCCTCTGCACATCAAACCACGTCTGTGA

Translation (948 aa):
MEEKEILRRQIRLLQGLIDDYKTLHGNAPAPGTPAASGWQPPTYHSGRAFSARYPRPSRRGYSSHHGPSW
RKKYSLVNRPPGPSDPPADHAVRPLHGARGGQPPVPQQHVLERQVQLSQGQNVVIKVKPPSKSGSASASG
AQRGSLEEFEETPWSDQRPREGEGEPPRGQLQPSRPTRARGTCSVEDPLLVCQKEPGKPRMVKSVGSVGD
SPREPRRTVSESVIAVKASFPSSALPPRTGVALGRKLGSHSVASCAPQLLGDRRVDAGHTDQPVPSGSVG
GPARPASGPRQAREASLVVTCRTNKFRKNNYKWVAASSKSPRVARRALSPRVAAENVCKASAGMANKVEK
PQLIADPEPKPRKPATSSKPGSAPSKYKWKASSPSASSSSSFRWQSEASSKDHASQLSPVLSRSPSGDRP
AVGHSGLKPLSGETPLSAYKVKSRTKIIRRRSSTSLPGDKKSGTSPAATAKSHLSLRRRQALRGKSSPVL
KKTPNKGLVQVTTHRLCRLPPSRAHLPTKEASSLHAVRTAPTSKVIKTRYRIVKKTPASPLSAPPFPLSL
PSWRARRLSLSRSLVLNRLRPVASGGGKAQPGSPWWRSKGYRCIGGVLYKVSANKLSKTSGQPSDAGSRP
LLRTGRLDPAGSCSRSLASRAVQRSLAIIRQARQRREKRKEYCMYYNRFGRCNRGERCPYIHDPEKVAVC
TRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKGYCPLGAKC
KKKHTLLCPDFARRGACPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSASQRPT
RQTPSSAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQEAALAAACSNRLCKLP
SFISLQSSPSPGAQPRVRAPRAPLTKDSGKPLHIKPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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