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Report for CCDS47839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47839.1 Public Homo sapiens 8 GOT1L1 24 110 108 CCDS HistoryNCBI Gene:137362Re-query CCDS DB by CCDS ID:47839.1Re-query CCDS DB by GeneID:137362See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307599.5 ENSP00000303077.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307599.5Link to Ensembl Protein Viewer:ENSP00000303077.4Re-query CCDS DB by Nucleotide ID:ENST00000307599Re-query CCDS DB by Protein ID:ENSP00000303077
Original member Current member NCBI NM_152413.3 NP_689626.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152413.3Link to Protein Sequence:NP_689626.2Re-query CCDS DB by Nucleotide ID:NM_152413Re-query CCDS DB by Protein ID:NP_689626Link to BLAST:NP_689626.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689626.2 421 Q8NHS2 421 100% 0 0

Chromosomal Locations for CCDS 47839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 37934293 37934486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37935073 37935215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37935704 37935869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37936720 37936870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37936965 37937057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37937277 37937386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37937638 37937749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37938700 37938881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37939915 37940029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGCCCACCCTTTCAGTGTTCATGGATGTGCCCCTCGCCCACAAGCTAGAGGGCAGCTTGTTAAAGACCT
ACAAACAAGATGATTACCCGAACAAGATATTCTTAGCCTATAGAGTCTGCATGACAAATGAAGGCCATCC
CTGGGTTTCTCTCGTGGTGCAGAAGACTCGACTACAGATTTCACAGGATCCCTCCCTGAATTATGAGTAC
TTGCCCACCATGGGCCTGAAATCATTCATCCAGGCCTCTCTAGCACTCCTCTTTGGAAAGCACAGCCAAG
CCATTGTGGAGAACAGGGTAGGGGGTGTACACACTGTTGGTGACAGTGGTGCCTTCCAGCTTGGCGTCCA
GTTTCTCAGAGCTTGGCATAAGGATGCTCGTATAGTTTACATCATCTCTTCTCAAAAAGAACTGCATGGA
CTCGTCTTCCAGGACATGGGCTTTACAGTTTATGAATACTCTGTCTGGGACCCCAAGAAGCTATGCATGG
ACCCCGACATACTCCTCAATGTGGTGGAGCAGATCCCACATGGCTGTGTCCTTGTGATGGGGAACATTAT
CGACTGCAAGTTGACACCAAGTGGGTGGGCAAAGTTGATGTCCATGATAAAGAGCAAGCAGATATTCCCA
TTTTTTGATATTCCCTGTCAAGGTTTATACACCAGTGACTTGGAAGAAGATACTAGAATCTTACAATACT
TTGTGTCTCAAGGCTTTGAGTTCTTCTGCAGCCAGTCTCTGTCCAAGAATTTTGGCATTTATGATGAAGG
AGTGGGGATGCTAGTGGTGGTGGCAGTCAACAACCAGCAGCTGCTGTGTGTCCTCTCCCAGCTGGAAGGA
TTAGCCCAGGCCCTGTGGCTAAACCCCCCCAACACGGGTGCACGTGTCATCACCTCCATCCTCTGCAACC
CTGCTCTGCTGGGAGAATGGAAGCAGAGTCTAAAAGAAGTTGTAGAGAACATCATGCTAACCAAGGAAAA
AGTGAAGGAGAAACTCCAGCTCCTGGGAACCCCTGGGTCCTGGGGTCACATCACCGAGCAGAGTGGGACC
CACGGCTATCTTGGACTCAACTCCCAGCAGGTGGAATACCTGGTCAGGAAGAAGCACATCTATATCCCCA
AGAACGGTCAGATTAACTTCAGCTGTATCAATGCCAACAACATAAATTACATCACTGAGGGCATCAATGA
GGCTGTCCTCCTCACAGAGAGCTCAGAGATGTGTCTTCCAAAGGAAAAAAAAACACTGATTGGAATAAAA
CTTTAG

Translation (421 aa):
MPTLSVFMDVPLAHKLEGSLLKTYKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEY
LPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARIVYIISSQKELHG
LVFQDMGFTVYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMGNIIDCKLTPSGWAKLMSMIKSKQIFP
FFDIPCQGLYTSDLEEDTRILQYFVSQGFEFFCSQSLSKNFGIYDEGVGMLVVVAVNNQQLLCVLSQLEG
LAQALWLNPPNTGARVITSILCNPALLGEWKQSLKEVVENIMLTKEKVKEKLQLLGTPGSWGHITEQSGT
HGYLGLNSQQVEYLVRKKHIYIPKNGQINFSCINANNINYITEGINEAVLLTESSEMCLPKEKKTLIGIK
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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