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Report for CCDS5819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5819.1 Public Homo sapiens 7 CPA5 24 110 108 CCDS HistoryNCBI Gene:93979Re-query CCDS DB by CCDS ID:5819.1Re-query CCDS DB by GeneID:93979See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5819.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393213.7 ENSP00000376907.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393213.7Link to Ensembl Protein Viewer:ENSP00000376907.3Re-query CCDS DB by Nucleotide ID:ENST00000393213Re-query CCDS DB by Protein ID:ENSP00000376907
Original member Current member EBI ENST00000474905.6 ENSP00000417314.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000474905.6Link to Ensembl Protein Viewer:ENSP00000417314.1Re-query CCDS DB by Nucleotide ID:ENST00000474905Re-query CCDS DB by Protein ID:ENSP00000417314
Original member Current member EBI ENST00000461828.5 ENSP00000418183.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461828.5Link to Ensembl Protein Viewer:ENSP00000418183.1Re-query CCDS DB by Nucleotide ID:ENST00000461828Re-query CCDS DB by Protein ID:ENSP00000418183
Original member Current member EBI ENST00000466363.6 ENSP00000419025.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466363.6Link to Ensembl Protein Viewer:ENSP00000419025.2Re-query CCDS DB by Nucleotide ID:ENST00000466363Re-query CCDS DB by Protein ID:ENSP00000419025
Original member Current member EBI ENST00000485477.5 ENSP00000420237.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485477.5Link to Ensembl Protein Viewer:ENSP00000420237.1Re-query CCDS DB by Nucleotide ID:ENST00000485477Re-query CCDS DB by Protein ID:ENSP00000420237
Original member Current member NCBI NM_001127441.2 NP_001120913.1 Accepted alive Link to Nucleotide Sequence:NM_001127441.2Link to Protein Sequence:NP_001120913.1Re-query CCDS DB by Nucleotide ID:NM_001127441Re-query CCDS DB by Protein ID:NP_001120913Link to BLAST:NP_001120913.1
Original member Current member NCBI NM_001318223.2 NP_001305152.1 Accepted alive Link to Nucleotide Sequence:NM_001318223.2Link to Protein Sequence:NP_001305152.1Re-query CCDS DB by Nucleotide ID:NM_001318223Re-query CCDS DB by Protein ID:NP_001305152Link to BLAST:NP_001305152.1
Original member Current member NCBI NM_080385.5 NP_525124.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080385.5Link to Protein Sequence:NP_525124.3Re-query CCDS DB by Nucleotide ID:NM_080385Re-query CCDS DB by Protein ID:NP_525124Link to BLAST:NP_525124.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120913.1 436 Q8WXQ8-1 436 100% 0 0
NP_001305152.1 436 Q8WXQ8-1 436 100% 0 0
NP_525124.3 436 Q8WXQ8-1 436 100% 0 0

Chromosomal Locations for CCDS 5819.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130346486 130346601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130347766 130347847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130349975 130350109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130359589 130359687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130361143 130361244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130362438 130362539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130362884 130362994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130363419 130363509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130367372 130367571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130367906 130367990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130368410 130368597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCT
TCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGGGGACCAGGTTCTTCGAGTCCTGGC
CAAAGATGAGAAGCAGCTTTCACTTCTCGGGGATCTGGAGGGCCTGAAACCCCAGAAGGTGGACTTCTGG
CGTGGCCCAGCCAGGCCCAGCCTCCCTGTGGATATGAGAGTTCCTTTCTCTGAACTGAAAGACATCAAAG
CTTATCTGGAGTCTCATGGACTTGCTTACAGCATCATGATAAAGGACATCCAGGTGCTGCTGGATGAGGA
AAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCAC
ACCCTGGAGGAGATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTC
AGATTGGCAACAGCTTTGAAAACCAGTCCATTCTTGTCCTGAAGTTCAGCACTGGAGGTTCTCGGCACCC
AGCCATCTGGATTGACACTGGAATTCACTCCCGGGAGTGGATCACCCATGCCACCGGCATCTGGACTGCC
AATAAGATTGTCAGTGATTATGGCAAAGACCGTGTCCTGACAGACATACTGAATGCCATGGACATCTTCA
TAGAGCTCGTCACAAACCCTGATGGGTTTGCTTTTACCCACAGCATGAACCGCTTATGGCGGAAGAACAA
GTCCATCAGACCTGGAATCTTCTGCATCGGCGTGGATCTCAACAGGAACTGGAAGTCGGGTTTTGGAGGA
AATGGTTCTAACAGCAACCCCTGCTCAGAAACTTATCACGGGCCCTCCCCTCAGTCGGAGCCGGAGGTGG
CTGCCATAGTGAACTTCATCACAGCCCATGGCAACTTCAAGGCTCTGATCTCCATCCACAGCTACTCTCA
GATGCTTATGTACCCTTACGGCCGATTGCTGGAGCCCGTTTCAAATCAGAGGGAGTTGTACGATCTTGCC
AAGGATGCGGTGGAGGCCTTGTATAAGGTCCATGGGATCGAGTACATTTTTGGCAGCATCAGCACCACCC
TCTATGTGGCCAGTGGGATCACCGTCGACTGGGCCTATGACAGTGGCATCAAGTACGCCTTCAGCTTTGA
GCTCCGGGACACTGGGCAGTATGGCTTCCTGCTGCCGGCCACACAGATCATCCCCACGGCCCAGGAGACG
TGGATGGCGCTTCGGACCATCATGGAGCACACCCTGAATCACCCCTACTAG

Translation (436 aa):
MQGTPGGGTRPGPSPVDRRTLLVFSFILAAALGQMNFTGDQVLRVLAKDEKQLSLLGDLEGLKPQKVDFW
RGPARPSLPVDMRVPFSELKDIKAYLESHGLAYSIMIKDIQVLLDEERQAMAKSRRLERSTNSFSYSSYH
TLEEIYSWIDNFVMEHSDIVSKIQIGNSFENQSILVLKFSTGGSRHPAIWIDTGIHSREWITHATGIWTA
NKIVSDYGKDRVLTDILNAMDIFIELVTNPDGFAFTHSMNRLWRKNKSIRPGIFCIGVDLNRNWKSGFGG
NGSNSNPCSETYHGPSPQSEPEVAAIVNFITAHGNFKALISIHSYSQMLMYPYGRLLEPVSNQRELYDLA
KDAVEALYKVHGIEYIFGSISTTLYVASGITVDWAYDSGIKYAFSFELRDTGQYGFLLPATQIIPTAQET
WMALRTIMEHTLNHPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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